Table 2

Top 20 categories for breast cancer classification

Rank

Category

FDR


1

Breast_cancer_estrogen_signalling GEArray

0.02

1

Drug_resistance_and_metabolism BioCarta

0.02

1

FRASOR_ER_UP Frasor_et_al_2004

0.02

4

mta3Pathway BioCarta

0.041

5

Fatty_Acid_Synthesis BioCarta

0.065

6

Cell_cycle_checkpoint II

0.065

6

p35alzheimersPathway BioCarta

0.065

6

FRASOR_ER_DOWN Frasor_et_al_2004

0.065

9

L-phenylalanine catabolism

0.068

9

UDP-glucose metabolism

0.068

9

Cell_cycle_regulator

0.068

12

Electron_transporter_activity BioCarta

0.078

13

skp2e2fPathway BioCarta

0.1

14

Fatty_acid_metabolism BioCarta

0.1

15

Ubiquinone biosynthesis

0.102

16

MAP00010_Glycolysis_Gluconeogenesis GenMAPP

0.12

16

MAPKKK_cascade GO

0.12

18

G1Pathway BioCarta

0.134

18

MAP00280_Valine_leucine_and_isoleucine_degradation GenMAPP

0.134

20

Response to metal ion

0.144


FDR, false discovery rate; GO, Gene Ontology; LeFE, Learner of Functional Enrichment.

Eichler et al. Genome Biology 2007 8:R187   doi:10.1186/gb-2007-8-9-r187

Open Data