Table 1

DetectiV normalization methods

Method

Normalized statistic

Terms


Median

<a onClick="popup('http://genomebiology.com/2007/8/9/R190/mathml/M1','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2007/8/9/R190/mathml/M1">View MathML</a>

Where <a onClick="popup('http://genomebiology.com/2007/8/9/R190/mathml/M2','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2007/8/9/R190/mathml/M2">View MathML</a> is the value for probe i on array j and <a onClick="popup('http://genomebiology.com/2007/8/9/R190/mathml/M3','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2007/8/9/R190/mathml/M3">View MathML</a> is the median value for all probes on array j

Control

<a onClick="popup('http://genomebiology.com/2007/8/9/R190/mathml/M4','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2007/8/9/R190/mathml/M4">View MathML</a>

Where <a onClick="popup('http://genomebiology.com/2007/8/9/R190/mathml/M2','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2007/8/9/R190/mathml/M2">View MathML</a> is the value for probe i on array j and <a onClick="popup('http://genomebiology.com/2007/8/9/R190/mathml/M5','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2007/8/9/R190/mathml/M5">View MathML</a> is the mean value for control oligo c on array j

Array

<a onClick="popup('http://genomebiology.com/2007/8/9/R190/mathml/M6','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2007/8/9/R190/mathml/M6">View MathML</a>

Where <a onClick="popup('http://genomebiology.com/2007/8/9/R190/mathml/M2','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2007/8/9/R190/mathml/M2">View MathML</a> is the value for probe i on array j and <a onClick="popup('http://genomebiology.com/2007/8/9/R190/mathml/M7','MathML',630,470);return false;" target="_blank" href="http://genomebiology.com/2007/8/9/R190/mathml/M7">View MathML</a> is the value for probe i on control array/channel c


Explanation of the three normalized statistics offered by DetectiV.

Watson et al. Genome Biology 2007 8:R190   doi:10.1186/gb-2007-8-9-r190

Open Data