Table 7

Top hit for GSE8746

Array

RNA

Top hit

p value

Mean


GSM216542

Amplified RNA from cell cultured FMDV type O

FMDO

1.51E-25

2.296645

GSM217164

Amplified RNA from cell cultured FMDV type O

FMDO

1.07E-45

3.513068

GSM217167

Amplified RNA from cell cultured FMDV type O

FMDO

2.36E-48

3.446262

GSM217169

Amplified RNA from cell cultured FMDV type O

FMDO

5.91E-30

2.827877

GSM217172

Amplified RNA from cell cultured FMDV type A

FMDA

6.96E-30

3.560941

GSM217175

Amplified RNA from cell cultured FMDV type A

FMDA

8.71E-14

1.553392

GSM217177

Amplified RNA from sheep infected with FMDV type O

FMDO

1.12E-27

2.431874

GSM217180

Amplified RNA from cell cultured FMDV type A

FMDA

2.97E-33

3.609092

GSM217183

Amplified RNA from cell cultured Avian IBV

IBV

1.05E-21

5.262134

GSM217184

Amplified RNA from cell cultured Avian IBV

IBV

3.49E-33

7.958662

GSM217186

Amplified RNA from cell cultured Avian IBV

IBV

6.20E-33

7.827526

GSM217188

Amplified RNA from cell cultured Avian IBV

IBV

1.44E-35

8.0118


The top hit from DetectiV for the 12 arrays from the GSE8746 dataset. DetectiV produces the correct result in all 12 cases.

Watson et al. Genome Biology 2007 8:R190   doi:10.1186/gb-2007-8-9-r190

Open Data