Table 1

Common response genes in the pathogen-shared host response

Microarray data


Set of three datasets (E. f, E. c and P. l)


BRB-ArrayTools

MAANOVA



Fold change (infected/control)

(Infected/control)


Sequence name

Gene name

Brief description

E. f

E. c

P. l

p value

p value


Up-regulated genes

T28H10.3

Asparaginyl peptidases

1.67

1.29

2.43

1.67

3.47E-05

1.17E-02

Y39B6A.20

asp-1

Aspartyl protease

3.54

1.80

2.17

2.09

2.06E-05

<1.00E-07

H22K11.1

asp-3

Aspartyl protease

2.59

1.47

2.29

1.96

4.80E-06

<1.00E-07

F21F8.3

asp-5

Aspartyl protease

2.53

2.48

1.86

2.06

2.83E-05

<1.00E-07

F21F8.7

asp-6

Aspartyl protease

2.96

1.89

1.88

-

-

<1.00E-07

Y39B6A.24

Aspartyl protease

1.84

1.40

1.62

1.59

1.21E-05

<1.00E-07

F44A2.3

BPI/LBP/CETP family protein

3.43

1.73

2.03

2.29

5.00E-07

2.35E-03

F35C5.6

clec-63

C-lectin

1.95

2.05

2.62

2.23

1.00E-07

<1.00E-07

Y37E3.15a

npp-13

Cullin

1.89

-

1.57

1.62

5.30E-06

-

T21H3.1

Lipase

1.38

1.99

1.89

1.85

8.00E-07

<1.00E-07

Y22F5A.4

lys-1

Lysozyme

1.33

1.30

1.81

-

-

4.82E-02

F59A1.6

Saposin A

1.92

1.82

1.92

1.78

2.60E-05

-

W02D7.8

Uncharacterized, nematode-specific

-

1.46

2.20

1.64

3.49E-05

-

ZK1320.3

Uncharacterized, nematode-specific

1.51

1.85

1.63

1.54

5.70E-06

-

F28B4.3

von Willebrand factor type A

2.28

-

2.09

-

-

4.14E-02

K06G5.1

von Willebrand factor type A

1.51

1.27

1.91

-

-

2.55E-02

Down-regulated genes

C55B7.4a

acdh-1

Acyl-CoA dehydrogenase

0.33

0.47

0.35

0.35

<1.00E-07

<1.00E-07

C17C3.12b

acdh-2

Acyl-CoA dehydrogenase

0.59

0.54

0.52

0.54

1.00E-07

<1.00E-07

Y38F1A.6

Alcohol dehydrogenase, class IV

0.59

0.54

0.53

0.55

8.00E-07

<1.00E-07

T05G5.6

ech-6

Enoyl-CoA hydratase

0.55

0.62

0.49

0.62

3.00E-06

<1.00E-07

K02F2.2

S-adenosylhomocysteine hydrolase

0.67

0.69

-

0.70

8.20E-06

4.69E-03

F54D11.1

pmt-2

SAM-dependent methyltransferases

0.67

0.68

0.66

0.69

1.13E-05

-


E. c, E. carotovora; E. f, E. faecalis; P. l, P. luminescens.

Wong et al. Genome Biology 2007 8:R194   doi:10.1186/gb-2007-8-9-r194

Open Data