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BLAST search of Tc1/mariner superfamily transposons in five eukaryotic genomes |
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| Ciona intestinalis ver 1.0 |
Brachiostoma belcheri ver 1.0 |
Fugu rubripes ver 4.0 |
Xenopus tropicalis ver 4.1 |
Nematostella vectensis ver 1.0 |
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| Query |
Scaffold no. |
Highest hsp_e-value |
Scaffold no. |
Highest hsp_e-value |
Scaffold no. |
Highest hsp_e-value |
Scaffold no. |
Highest hsp_e-value |
Scaffold no. |
Highest hsp_e-value |
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| Mos1 |
no hit |
- |
44 |
1.1 × e-29 |
no hit |
- |
78 |
3.2 × e-6 |
no hit |
- |
| SB |
no hit |
- |
532 |
0 |
299 |
0 |
314 |
0 |
2,141 |
0 |
| Minos |
no hit |
- |
532 |
8.6 × e-26 |
144 |
1.69 × e-39 |
566 |
0 |
2,141 |
2.9 × e-28 |
| Tc1 |
no hit |
- |
55 |
0 |
9 |
0 |
1,139 |
0 |
2,141 |
1.6 × e-41 |
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Databases released from JGI [82] were used for the analyses. Tblastn search at the threshold of 1 × e-5 was done with the amino acid sequences of the transposases shown in the 'Query' columns. Scaffold numbers that exhibited the top hit are described with the highest e values. If there was no hit, it is shown as 'no hit'. SB, Sleeping Beauty. | ||||||||||
Sasakura et al. Genome Biology 2007 8(Suppl 1):S3 doi:10.1186/gb-2007-8-s1-s3 |
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