Method
CPSARST: an efficient circular permutation search tool applied to the detection of novel protein structural relationships
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* Corresponding author: Ping-Chiang Lyu pclyu@life.nthu.edu.tw
Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu 30013, Taiwan
Genome Biology 2008, 9:R11 doi:10.1186/gb-2008-9-1-r11
Published: 18 January 2008Additional files
Additional data file 1:
The 90% sequence identity subset of the PDB (January 2007).
Format: TXT Size: 225KB Download file
Additional data file 2:
The 90% sequence identity subset of SCOP (v.1.71).
Format: TXT Size: 318KB Download file
Additional data file 3:
Protein structures shown in this large table were drawn by using Chime [70].
Format: PDF Size: 9.9MB Download file
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Additional data file 4:
Structural neighbors of the hypothetical protein YlqF in PDB retrieved by DALI [50].
Format: TXT Size: 1.1MB Download file
Additional data file 5:
Statistical results of protein structural database searches with broad criteria.
Format: PDF Size: 50KB Download file
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Additional data file 6:
A collection of 20,000 in silico random CPs.
Format: TXT Size: 4.9MB Download file
Additional data file 7:
Score and E-value ratios calculated from the RCP dataset.
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Additional data file 8:
Parameter settings used throughout this article.
Format: PDF Size: 63KB Download file
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