Genome Biology
Volume 9
Issue 1

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CPSARST: an efficient circular permutation search tool applied to the detection of novel protein structural relationships

Wei-Cheng Lo and Ping-Chiang Lyu

Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu 30013, Taiwan

author email corresponding author email

Genome Biology 2008, 9:R11doi:10.1186/gb-2008-9-1-r11


Published:	18 January 2008

Subject areas: Biochemistry and structural biology, Bioinformatics

Additional data file 1:

The 90% sequence identity subset of the PDB (January 2007).

Format: TXT Size: 225KB Download file

Additional data file 2:

The 90% sequence identity subset of SCOP (v.1.71).

Format: TXT Size: 318KB Download file

Additional data file 3:

Protein structures shown in this large table were drawn by using Chime [70].

Format: PDF Size: 10.2MB Download file

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Additional data file 4:

Structural neighbors of the hypothetical protein YlqF in PDB retrieved by DALI [50].

Format: TXT Size: 1.1MB Download file

Additional data file 5:

Statistical results of protein structural database searches with broad criteria.

Format: PDF Size: 50KB Download file

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Additional data file 6:

A collection of 20,000 in silico random CPs.

Format: TXT Size: 5MB Download file

Additional data file 7:

Score and E-value ratios calculated from the RCP dataset.

Format: PDF Size: 34KB Download file

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Additional data file 8:

Parameter settings used throughout this article.

Format: PDF Size: 63KB Download file

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