Table 5

Top 20 CP relationships detected from the nrPDB-90 dataset for hypothetical protein YlqF*

No.

PDB entry/size

E-value

RMSD/Alignment size

Function

1

1ZBD/203

4.00E-13

3.17/130

Rabphilin-3A

2

1KY2/182

4.00E-13

3.07/122

GTP-binding

3

2F7S/217

4.00E-13

3.52/125

Ras-related protein Rab-27B protein YPT7P

4

2NZJ/175

8.00E-13

2.94/123

GTP-binding protein REM 1

5

1T91/207

9.00E-13

3.06/123

Ras-related protein Rab-7

6

1X3S/195

2.00E-12

2.80/117

Ras-related protein Rab-18

7

1YU9/175

6.00E-12

2.70/123

GTP-binding protein, GTPase domain

8

2EW1/201

6.00E-12

2.74/128

Ras-related protein Rab-30

9

2GF9/189

7.00E-12

2.89/126

Ras-related protein Rab-3D

10

1YVD/169

8.00E-12

2.12/123

Ras-related protein Rab-22A

11

1PUI/210

1.00E-11

3.00/130

Probable GTP-binding protein engB

12

2O52/200

1.00E-11

2.92/127

Ras-related protein Rab-4B

13

1U8Y/168

1.00E-11

2.81/110

Ras-related protein Ral-A

14

1HUQ/164

1.00E-11

2.80/123

Rab5C, GTPase domain

15

2HUP/201

1.00E-11

3.11/129

Ras-related protein Rab-43

16

1FZQ/181

1.00E-11

2.58/123

ADP-ribosylation factor-like protein 3

17

2OCB/180

3.00E-11

2.78/121

Ras-related protein Rab-9B

18

1OIV/191

4.00E-11

2.81/121

Ras-related protein Rab-11A

19

2FN4/181

4.00E-11

3.11/129

Ras-related protein R-Ras

20

1Z0F/179

6.00E-11

3.04/121

Rab14, member Ras oncogene family

*YlqF ([PDB:1PUJ], chain A) is a conserved hypothetical protein from B. subtilis. This structure was determined by the New York Structural Genomics Research Consortium (NYSGRC).

Lo and Lyu Genome Biology 2008 9:R11   doi:10.1186/gb-2008-9-1-r11