Table 1 |
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Information on the sources and public access for the datasets analyzed in the paper |
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Figures‡ |
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Dataset |
Population* |
Laboratory† |
Public repository |
Accession number |
1a,c; 2a |
1b,d; 2b |
1e |
3 |
4a |
4b |
5a |
5b |
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Affymetrix Mouse Genome 430 2.0 data |
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Spleen CD8 DCs (2) |
MD/SCPK |
GEO [95] |
GSE9810 |
X |
X |
X |
X |
X |
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Spleen CD11b DCs (2) |
MD/SCPK |
GEO |
GSE9810 |
X |
X |
X |
X |
X |
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Spleen pDCs (2) |
MD/SCPK |
GEO |
GSE9810 |
X |
X |
X |
X |
X |
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Spleen NK cells (2) |
MD/SCPK |
GEO |
GSE9810 |
X |
X |
X |
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Spleen CD8 T cells (2) |
MD/SCPK |
GEO |
GSE9810 |
X |
X |
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Spleen B cells (3) |
MD/SCPK |
GEO |
GSE9810 |
X |
X |
X |
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Spleen CD4 T cells (2) |
AYR |
GEO |
GSM44979; GSM44982 |
X |
X |
X |
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Spleen monocytes (3) |
SB |
NCI caArray [96] |
NA |
X |
X |
X |
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Spleen monocytes (2) |
BP |
GEO |
GSM224733; GSM224735 |
X |
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Peritoneal MΦ (1) |
SA |
GEO |
GSM218300 |
X |
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BM-MΦ (2) |
RM |
GEO |
GSM177078; GSM177081 |
X |
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BM-MΦ (1) |
CK |
GEO |
GSM232005 |
X |
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BM-DCs (2) |
RM |
GEO |
GSM40053; GSM40056 |
X |
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BM-DCs (2) |
MH |
GEO |
GSM101418; GSM101419 |
X |
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Affymetrix Mouse U74Av2 data |
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Spleen CD4 T cells (3) |
CB/DM |
GEO |
GSM66901; GSM66902; GSM66903 |
X |
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Spleen B2 cells (2) |
CB/DM |
GEO |
GSM66913; GSM66914 |
X |
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Spleen B1 cells (2) |
CB/DM |
GEO |
GSM66915; GSM66916 |
X |
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Spleen NK cells (2) |
FT |
EBI ArrayExpress [97] |
E-MEXP-354 |
X |
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Spleen CD4 DCs (2) |
CRES |
GEO |
GSM4697; GSM4707 |
X |
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Spleen CD8 DCs (2) |
CRES |
GEO |
GSM4708; GSM4709 |
X |
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Spleen DN DCs (2) |
CRES |
GEO |
GSM4710; GSM4711 |
X |
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Spleen IKDCs (2) |
FH |
GEO |
GSM85329; GSM85330 |
X |
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Spleen cDCs (2) |
FH |
GEO |
GSM85331; GSM85332 |
X |
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Spleen pDCs (2) |
FH |
GEO |
GSM85333; GSM85334 |
X |
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Affymetrix Human Genome U133 Plus 2.0 data |
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Blood monocytes (3) |
FRS |
Authors' webpage [86] |
NA |
X |
X |
X |
X |
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Blood CD4 T cells (3) |
FRS |
Authors' webpage |
NA |
X |
X |
X |
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Blood CD8 T cells (3) |
FRS |
Authors' webpage |
NA |
X |
X |
X |
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Blood B cells (3) |
FRS |
Authors' webpage |
NA |
X |
X |
X |
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Blood NK cells (3) |
FRS |
Authors' webpage |
NA |
X |
X |
X |
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Blood neutrophils (3) |
FRS |
Authors' webpage |
NA |
X |
X |
X |
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Blood pDCs (3) |
CAKB |
EBI ArrayExpress |
E-TABM-34 |
X |
X |
X |
X |
X |
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Blood BDCA1 DCs (3) |
CAKB |
EBI ArrayExpress |
E-TABM-34 |
X |
X |
X |
X |
X |
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Blood BDCA3 DCs (3) |
CAKB |
EBI ArrayExpress |
E-TABM-34 |
X |
X |
X |
X |
X |
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Blood CD16 DCs (3) |
CAKB |
EBI ArrayExpress |
E-TABM-34 |
X |
X |
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PBMC-derived MΦ (2) |
SYH |
GEO |
GSM109788; GSM109789 |
X |
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Monocyte-derived MΦ |
LZH |
GEO |
GSM213500 |
X |
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Monocyte-derived DCs (3) |
MVD |
GEO |
GSM181931; GSM181933; GSM181971 |
X |
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*The number of replicates is shown in parentheses. †MD/SCPK, M Dalod, S Chan, P Kastner; AYR, AY Rudensky; SB, S Bondada; BP, B Pulendran; SA, S Akira; RM, R Medzhitov; CK, C Kim; MH, M Hikida; CB/DM, C Benoist, D Mathis; FT, F Takei; CRES, C Reis e Sousa; FH, F Housseau; FRS, FR Sharp; CAKB, CAK Borrebaeck; SYH, S Yla-Herttuala; LZH, L Ziegler-Heitbrock; MVD, MV Dhodapkar. ‡Shown in the indicated figure in this study. BM-DC, mouse bone-marrow derived GM-CSF DCs; BM-MΦ, mouse bone marrow-derived M-CSF macrophages; monocyte-derived MΦ, monocyte-derived M-CSF macrophages; NA, not applicable; PBMC-derived MΦ, human peripheral blood mononuclear cell-derived M-CSF macrophages; peritoneal MΦ, peritoneal mouse macrophages. |
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Robbins et al. Genome Biology 2008 9:R17 doi:10.1186/gb-2008-9-1-r17 |
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