|
Search for trpD and trpA genes using multiple probes |
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| Species and strain* |
matches† |
both‡ |
probe only§ |
Bacillus only¶ |
% new¥ |
|
|
|||||
| trpD |
|||||
| Sulfolobus solfataricus P2 |
454 |
444 |
10 |
24 |
2 |
| Thermoplasma acidophilum DSM 1728 |
409 |
404 |
5 |
64 |
1 |
| Nostoc sp. PCC 7120 |
436 |
430 |
6 |
38 |
1 |
| Thermoanaerobacter tengcongensis MB4 |
493 |
467 |
26 |
1 |
6 |
| Rhodopirellula baltica SH 1 |
448 |
442 |
6 |
26 |
1 |
| Bacteroides fragilis NCTC 9343 |
424 |
419 |
5 |
49 |
1 |
| Corynebacterium jeikeium K411 |
443 |
433 |
10 |
35 |
2 |
| Methanosphaera stadtmanae DSM 3091 |
441 |
433 |
8 |
35 |
2 |
| Neisseria meningitidis FAM18 |
474 |
458 |
16 |
10 |
3 |
| Clostridium kluyveri DSM 555 |
492 |
464 |
28 |
4 |
6 |
| All# |
514 |
468 |
46 |
0 |
10 |
| trpA |
|||||
| Sulfolobus solfataricus P2 |
222 |
222 |
0 |
241 |
0 |
| Nostoc sp. PCC 7120 |
471 |
445 |
26 |
18 |
6 |
| Pseudomonas putida KT2440 |
498 |
457 |
41 |
6 |
9 |
| Rhodopirellula baltica SH1 |
478 |
456 |
22 |
7 |
5 |
| Corynebacterium jeikeium K4111 |
463 |
432 |
31 |
31 |
7 |
| Bacteroides fragilis NCTC 9343 |
437 |
431 |
6 |
32 |
1 |
| Clostridium kluyveri DSM 555 |
475 |
443 |
32 |
20 |
7 |
| Thermoplasma acidophilum DSM 1728 |
25 |
25 |
0 |
438 |
0 |
| Neisseria meningitidis 053442 |
479 |
452 |
27 |
11 |
6 |
| Leptospira biflexa serovar Patoc |
474 |
451 |
23 |
12 |
5 |
| All# |
517 |
463 |
54 |
0 |
12 |
|
* Species and strain, those used to probe the database † Matches, number of genes detected using the specific probe ‡ Both, genes detected by both the specific probe and that from Bacillus; § Probe only, those sequences detected by the specific probe but not by that from Bacillus ¶ Bacillus only, those sequences detected by the Bacillus probe but not by the specific probe ¥ % new, per cent of new sequences not detected by the Bacillus probe # All, the total number of sequences found by all probes; those that were common to Bacillus and one or more of the specific probes; the number of genes found with specific probes but not by that from Bacillus (new sequences); those found by the Bacillus probe but not by the others; the per cent of new sequences, that is the number of new sequences divided by the number of Bacillus sequences times 100. The data given in the table are raw data without the elimination of sequences that are somewhat doubtful because in this table we are trying to maximally expand the search parameters. | |||||
Kagan et al. Genome Biology 2008 9:R20 doi:10.1186/gb-2008-9-1-r20 |
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