Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs

Andra Ivan¹ , Marc S Halfon²^,3 and Saurabh Sinha¹

¹Department of Computer Science and Institute for Genomic Biology, University of Illinois at Urbana-Champaign, N. Goodwin Ave, Urbana, IL 61801, USA

²Department of Biochemistry, State University of New York at Buffalo, Main St, Buffalo, NY 14214, USA

³New York State Center of Excellence in Bioinformatics and the Life Sciences, Ellicott St, Buffalo, NY 14203, USA

author email corresponding author email

Genome Biology 2008, 9:R22doi:10.1186/gb-2008-9-1-r22


Published:	28 January 2008

Subject areas: Bioinformatics, Methods

Additional data file 1:

Supplementary Tables S1-S7, and a URL for downloading complete benchmark data sets and evaluation script.

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