Table 4 |
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|
CRM-level sensitivity of data sets |
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|
Set name |
CRMs* |
Stubb† |
CSam† |
D2Z-set† |
CisModule† |
MCD† |
|
|
||||||
|
mapping3.adult |
34 |
0.35 (12) |
0.24 (8) |
0.21 (7) |
0.24 (8) |
0.26 (9) |
|
mapping1.adult mesoderm |
5 |
0.20 (1) |
0.20 (1) |
0.40 (2) |
0.00 (0) |
0.20 (1) |
|
mapping1.amnioserosa |
7 |
0.14 (1) |
0.29 (2) |
0.14 (1) |
0.00 (0) |
0.29 (2) |
|
mapping1.blastoderm |
77 |
0.53 (41) |
0.42 (32) |
0.21 (16) |
0.14 (11) |
0.12 (9) |
|
mapping1.cardiac mesoderm |
8 |
0.38 (3) |
0.25 (2) |
0.50 (4) |
0.12 (1) |
0.50 (4) |
|
mapping1.cns |
34 |
0.12 (4) |
0.26 (9) |
0.24 (8) |
0.15 (5) |
0.15 (5) |
|
mapping1.dorsal ectoderm |
8 |
0.38 (3) |
0.25 (2) |
0.00 (0) |
0.12 (1) |
0.25 (2) |
|
mapping1.ectoderm |
37 |
0.30 (11) |
0.38 (14) |
0.35 (13) |
0.22 (8) |
0.19 (7) |
|
mapping2.ectoderm |
51 |
0.24 (12) |
0.39 (20) |
0.25 (13) |
0.14 (7) |
0.18 (9) |
|
mapping1.endoderm |
16 |
0.25 (4) |
0.31 (5) |
0.19 (3) |
0.25 (4) |
0.12 (2) |
|
mapping1.eye |
6 |
0.00 (0) |
0.50 (3) |
0.17 (1) |
0.33 (2) |
0.17 (1) |
|
mapping2.eye |
18 |
0.33 (6) |
0.11 (2) |
0.11 (2) |
0.22 (4) |
0.11 (2) |
|
mapping1.fat body |
5 |
0.20 (1) |
0.00 (0) |
0.00 (0) |
0.00 (0) |
0.00 (0) |
|
mapping1.female gonad |
10 |
0.30 (3) |
0.10 (1) |
0.00 (0) |
0.20 (2) |
0.00 (0) |
|
mapping1.glia |
7 |
0.14 (1) |
0.29 (2) |
0.29 (2) |
0.14 (1) |
0.43 (3) |
|
mapping1.imaginal disc |
47 |
0.11 (5) |
0.21 (10) |
0.30 (14) |
0.19 (9) |
0.15 (7) |
|
mapping2.imaginal disc |
12 |
0.08 (1) |
0.17 (2) |
0.17 (2) |
0.08 (1) |
0.25 (3) |
|
mapping3.larva |
69 |
0.16 (11) |
0.30 (21) |
0.25 (17) |
0.19 (13) |
0.13 (9) |
|
mapping1.male gonad |
8 |
0.25 (2) |
0.25 (2) |
0.12 (1) |
0.12 (1) |
0.12 (1) |
|
mapping1.malpighian tubules |
4 |
0.25 (1) |
0.25 (1) |
0.00 (0) |
0.00 (0) |
0.25 (1) |
|
mapping1.mesectoderm |
5 |
0.20 (1) |
0.60 (3) |
0.20 (1) |
0.00 (0) |
0.20 (1) |
|
mapping1.mesoderm |
16 |
0.38 (6) |
0.31 (5) |
0.31 (5) |
0.31 (5) |
0.31 (5) |
|
mapping2.mesoderm |
45 |
0.36 (16) |
0.24 (11) |
0.31 (14) |
0.07 (3) |
0.22 (10) |
|
mapping1.neuroectoderm |
7 |
0.43 (3) |
0.71 (5) |
0.00 (0) |
0.29 (2) |
0.14 (1) |
|
mapping2.neuronal |
54 |
0.15 (8) |
0.35 (19) |
0.24 (13) |
0.09 (5) |
0.09 (5) |
|
mapping1.pns |
24 |
0.25 (6) |
0.29 (7) |
0.29 (7) |
0.17 (4) |
0.29 (7) |
|
mapping2.reproductive system |
21 |
0.29 (6) |
0.19 (4) |
0.14 (3) |
0.19 (4) |
0.24 (5) |
|
mapping1.salivary gland |
6 |
0.17 (1) |
0.17 (1) |
0.00 (0) |
0.17 (1) |
0.00 (0) |
|
mapping1.somatic muscle |
12 |
0.25 (3) |
0.33 (4) |
0.33 (4) |
0.17 (2) |
0.08 (1) |
|
mapping1.tracheal system |
9 |
0.11 (1) |
0.22 (2) |
0.22 (2) |
0.00 (0) |
0.00 (0) |
|
mapping1.ventral ectoderm |
12 |
0.50 (6) |
0.50 (6) |
0.25 (3) |
0.08 (1) |
0.17 (2) |
|
mapping1.visceral mesoderm |
12 |
0.17 (2) |
0.42 (5) |
0.25 (3) |
0.17 (2) |
0.50 (6) |
|
mapping2.wing |
33 |
0.24 (8) |
0.30 (10) |
0.30 (10) |
0.09 (3) |
0.18 (6) |
|
|
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|
*The number of CRMs in a data set. †The fraction (and number in parentheses) of CRMs in a data set that were 'hits' (that is, overlap greater than half the length of the shorter window). The best CRM-level sensitivity for each data set is in bold. |
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|
Ivan et al. Genome Biology 2008 9:R22 doi:10.1186/gb-2008-9-1-r22 |
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