Figure 11.

EVM and PASA automated annotation accuracies compared to alternatives. The gene prediction accuracy of both EVidenceModeler (EVM) and Program to Assemble Spliced Alignments (PASA) are shown in the context of the other methods evaluated as part of the ENCODE Genome Annotation Assessment Project (EGASP) competition. Although PASA alone performs quite well, the benefits from applying PASA as a postprocess to the EVM consensus predictions are not immediately apparent, except in the enumeration of alternatively spliced isoforms as shown in Figure 10. PASA and EVM are shown to perform similarly to the best performing methods in the EGASP competition.