Research article  

A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships

Claire Lemaitre, Aurélien Barré, Christine Citti, Florence Tardy, François Thiaucourt, Pascal Sirand-Pugnet, Patricia Thébault BMC Bioinformatics 2011, 12:457 (24 November 2011)

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Software  

MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heuristics

Raphaël Helaers, Michel C Milinkovitch BMC Bioinformatics 2010, 11:379 (15 July 2010)

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Research article  

Dating and functional characterization of duplicated genes in the apple (Malus domestica Borkh.) by analyzing EST data

Javier Sanzol BMC Plant Biology 2010, 10:87 (14 May 2010)

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Research  

2× genomes - depth does matter

Michel C Milinkovitch, Raphaël Helaers, Eric Depiereux, Athanasia C Tzika, Toni Gabaldón Genome Biology 2010, 11:R16 (9 February 2010)

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Research article  

Phylogenomics of the oxidative phosphorylation in fungi reveals extensive gene duplication followed by functional divergence

Marina Marcet-Houben, Giuseppe Marceddu, Toni Gabaldón BMC Evolutionary Biology 2009, 9:295 (21 December 2009)

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Correspondence  

Joining forces in the quest for orthologs

Toni Gabaldón, Christophe Dessimoz, Julie Huxley-Jones, Albert J Vilella, Erik LL Sonnhammer, Suzanna Lewis Genome Biology 2009, 10:403 (29 September 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | Editor’s summary