A simple, fast, and accurate method of phylogenomic inference
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* Corresponding author: Martin Wu mwu2000@gmail.com
Genome Biology 2008, 9:R151 doi:10.1186/gb-2008-9-10-r151
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BioMed Central: 6 citations
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Research article
Genomic insights into an obligate epibiotic bacterial predator: Micavibrio aeruginosavorus ARL-13 Zhang Wang, Daniel E Kadouri, Martin Wu BMC Genomics 2011, 12:453 (21 September 2011) |
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Proceedings
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences Bo Liu, Theodore Gibbons, Mohammad Ghodsi, Todd Treangen, Mihai Pop BMC Genomics 2011, 12(Suppl 2):S4 (27 July 2011) |
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Research article
Assembling networks of microbial genomes using linear programming Catherine Holloway, Robert G Beiko BMC Evolutionary Biology 2010, 10:360 (20 November 2010) An approach that uses linear programming and BLAST scores to capture ‘between-genome’ relationships can uncover vertical and lateral relationships among genomes and serve as an effective inference tool in its own right.
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Methodology article
Jeremy D Selengut, Douglas B Rusch, Daniel H Haft BMC Bioinformatics 2010, 11:52 (26 January 2010) |
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Research
Inferring clocks when lacking rocks: the variable rates of molecular evolution in bacteria Chih-Horng Kuo, Howard Ochman Biology Direct 2009, 4:35 (29 September 2009) This article is part of a collection on Evolutionary Biology 150... |
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Minireview
Kristen S Swithers, J Peter Gogarten, Gregory P Fournier Journal of Biology 2009, 8:54 (13 July 2009) Gogarten and colleagues review new research by Koonin and colleagues in Journal of Biology and explain how the obstacle of horizontal gene transfer can be circumvented to reconstruct the prokaryotic Tree of Life.
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