Table 5 |
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|
Comparing expression levels in honey bee versus fruit fly larvae |
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|
Honey bee accession number |
Protein description |
Slope difference (honey bee minus fruit fly) |
Expression trend: different or same? |
|
|
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|
GenBank:48126476 |
Translation: initiation factor 3f |
0.01 |
Same |
|
GenBank:110749015 |
Short-chain dehydrogenase family: oxidoreductase |
0.22 |
Same |
|
GenBank:110756656 |
Protein methylation: arginine methyltransferase |
0.10 |
Same |
|
GenBank:110759433 |
Ribonucleoprotein: ribonucleoprotein |
0.10 |
Same |
|
GenBank:110761364 |
Cytoskeleton: alpha-actinin |
0.19 |
Same |
|
GenBank:66547531 |
Pentose phosphate pathway: 6-phosphogluconate dehydrogenase |
0.24 |
Same |
|
GenBank:66509442 |
Peptidase: dipeptidyl aminopeptidase |
0.02 |
Same |
|
GenBank:110764347 |
Amino acid metabolism: enolase-phosphatase E1 (methionine salvage pathway) |
0.50 |
Same |
|
GenBank:110762382 |
Transcription: spermidine synthase |
0.51 |
Same |
|
GenBank:110763730 |
Antioxidant: glutathione S transferase |
0.32 |
Same |
|
GenBank:66504249 |
Uncategorized: protein kinase c substrate |
0.33 |
Same |
|
GenBank:110755309 |
Protein receptor: high density lipoprotein binding protein |
0.33 |
Same |
|
GenBank:110750855 |
Unknown function: unknown function |
0.36 |
Same |
|
GenBank:94158626 |
Electron transport chain: cytochrome p450 |
0.51 |
Same |
|
GenBank:58585148 |
Energy storage: hexamerin 70b |
0.15 |
Same |
|
GenBank:48095159 |
Peptidase: serine protease |
0.34 |
Same |
|
GenBank:66524124 |
Peptidase: carboxypeptidase B |
0.07 |
Same |
|
GenBank:66509812 |
Peptidase: angiotensin converting enzyme |
0.28 |
Same |
|
GenBank:110762229 |
Peptidase: chymotrypsin |
0.47 |
Same |
|
GenBank:66510448 |
Glycolipid metabolism: beta-glucosidase (glucocerebrosidase) |
0.10 |
Same |
|
GenBank:110766932 |
Uncategorized: mannosidase, lysosomal |
0.50 |
Same |
|
GenBank:66513481 |
Ubiquitination: ubiquitin-activating enzyme E1 |
0.48 |
Different |
|
GenBank:66522467 |
Uncategorized: juvenile hormone inducible protein |
0.95 |
Different |
|
GenBank:48104663 |
Protein receptor: protein kinase C receptor |
0.60 |
Different |
|
GenBank:110758189 |
Uncategorized: carboxylesterase |
0.94 |
Different |
|
GenBank:110756254 |
Ribonucleoprotein: ribonucleoprotein |
0.67 |
Different |
|
GenBank:66522232 |
Uncategorized: isochorismatase |
0.43 |
Different |
|
GenBank:66535270 |
Uncategorized: oxoacidtransferase |
0.42 |
Different |
|
GenBank:66521459 |
Membrane transporter: porin |
0.59 |
Different |
|
GenBank:110764660 |
Helicase: RNA helicase |
0.56 |
Different |
|
GenBank:110762902 |
ATP synthase: ATP synthase component |
0.77 |
Different |
|
GenBank:66525867 |
Small molecule carrier: solute carrier |
0.82 |
Different |
|
GenBank:58531215 |
Membrane transporter: translocase, ATP |
0.87 |
Different |
|
GenBank:110759569 |
Apoptosis: beta-hexosaminidase |
1.14 |
Different |
|
|
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|
Genes in a life-cycle transcriptomic analysis of D. melanogaster [15] were compared to honey bee larval proteomics data in this report by finding homologs common to these studies. Significant matches (see Materials and methods for criteria) were assessed by comparing the slope values calculated between days 1 and 4: a protein is marked 'same' if the sign of the slope was the same and had a difference no greater than 0.75; otherwise, they are marked as 'different'. |
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|
Chan and Foster Genome Biology 2008 9:R156 doi:10.1186/gb-2008-9-10-r156 |
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