Figure 9.

Regulator on regulator visualization. The command-line module InteractionGraph.jar has the capacity to convert to visualization-ready file formats that can be read by Cytoscape for visualization [28]. The functional transcriptional regulatory network dataset was filtered to show regulatory interactions only among transcription factors [21]. Red connections indicate activation while green are indicative of repression. The arrowhead points from the regulator to the target that is being regulated. Certain transcription factors are predominantly regulators of other transcription factors or regulated by other transcription factors.