Table 2 |
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|
Integrated toolsets |
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| Tool name |
Purpose |
Download |
Reference |
|
|
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| AlignAce |
Sequence discovery |
Acquire |
[15] |
| Avid |
Sequence alignment |
Acquire |
[13] |
| BLAST |
Genomic sequence matching |
Bundle |
[17] |
| ClustalW |
Sequence alignment |
Bundle |
[16] |
| cluster |
Hierarchical clustering |
Acquire |
[18] |
| MDSCAN |
Sequence discovery |
Bundle |
[20] |
| MEME |
Sequence discovery |
Bundle |
[19] |
| fastacmd |
Sequence retrieval |
Bundle |
[17] |
| rVista |
Sequence alignment |
Acquire |
[14] |
|
|
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|
The toolsets integrated into the ArrayPlex server environment. The download code of 'Bundle' indicates that the ArrayPlex installation program is capable of downloading the source-code and building the tool during the installation process with no further interaction needed. Alternatively, a code of 'Acquire' indicates that a license agreement is required for download and, thus, the installer of the ArrayPlex server must manually download a file and place it in the proper place on the ArrayPlex server. Documentation is provided for how to acquire and install all toolsets with this requirement. |
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|
Killion and Iyer Genome Biology 2008 9:R159 doi:10.1186/gb-2008-9-11-r159 |
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