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Whole genome transcriptome polymorphisms in Arabidopsis thaliana

Xu Zhang†, Jake K Byrnes†, Thomas S Gal, Wen-Hsiung Li and Justin O Borevitz*

Genome Biology 2008, 9:R165 doi:10.1186/gb-2008-9-11-r165

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BioMed Central: 2 citations

Method   Open Access

Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays

Luca Santuari, Sylvain Pradervand, Amelia-Maria Amiguet-Vercher, Jerôme Thomas, Eavan Dorcey, Keith Harshman, Ioannis Xenarios, Thomas E Juenger, Christian S Hardtke Genome Biology 2010, 11:R4 (12 January 2010)

Abstract | Full text | PDF | PubMed | F1000 Biology | Editor’s summary

A new approach to detect deletions in divergentgenomes combines short read sequencing and tilling array data. Its utility is demonstrated on Arabidopsis strains.

Research article   Open Access

Comparing genomic expression patterns across plant species reveals highly diverged transcriptional dynamics in response to salt stress

Harkamal Walia, Clyde Wilson, Abdelbagi M Ismail, Timothy J Close, Xinping Cui BMC Genomics 2009, 10:398 (25 August 2009)

Abstract | Full text | PDF | PubMed

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