Table 1 |
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|
Samples used for array validation and diversity analyses |
||||
| Parasite line |
Origin |
Source |
Single infection?* |
Chloroquine resistant (R)/sensitive (S) |
|
|
||||
| 7G8 |
Brazil |
MRA-152 |
Yes |
|
| ADA-2 |
Brazil |
Sandra do Lago Moraes |
Yes |
|
| 9_411 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
| 10_54 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
| 608_88 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
| 36_89 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
| 51 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
| JST |
Brazil |
Sandra do Lago Moraes |
Yes |
|
| 356_89 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
| 330_89 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
| 207_89 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
| FCC-2/Hainan |
China |
MRA-733 |
Yes |
S |
| Santa Lucia (El Salvador) |
El Salvador |
MRA-362 |
Yes |
|
| RO-33 |
Ghana |
MRA-200 |
Yes |
S |
| HB3 |
Honduras |
MRA-155 |
Yes |
|
| IGHC14 |
India |
Aditya Dash, Chetan Chitnis |
Yes |
|
| RAJ116 |
India |
Aditya Dash, Chetan Chitnis |
Yes |
|
| Dd2 |
Indochina/Laos |
MRA-156 |
Yes |
R |
| KMWII |
Kenya |
MRA-821 |
Yes |
|
| CF04.008 10B |
Malawi |
Dan Milner |
Yes |
|
| CF04.008 12G |
Malawi |
Dan Milner |
Yes |
|
| CF04.008 1F |
Malawi |
Dan Milner |
Yes |
|
| CF04.008 2G |
Malawi |
Dan Milner |
Yes |
|
| CF04.008 7H |
Malawi |
Dan Milner |
Yes |
|
| CF04.009 6D |
Malawi |
Dan Milner |
Yes |
|
| CF04.010 10B |
Malawi |
Dan Milner |
Yes |
|
| Malawi CF04.008 |
Malawi |
Dan Milner |
No |
|
| Malayan Camp R+ |
Malaysia |
MRA-330 |
Yes |
S |
| 3D7 |
Netherlands |
MRA-151 |
Yes |
S |
| D10 |
Papua New Guinea |
MRA-201 |
Yes |
S |
| Senegal V34.04 |
Senegal |
J Daily |
Yes |
S |
| Senegal P31.01 |
Senegal |
J Daily |
Yes |
S |
| Senegal P51.02 |
Senegal |
M Duraisingh |
Yes |
R |
| Senegal V35.04 |
Senegal |
J Daily |
Yes |
S |
| Senegal P18.02 |
Senegal |
M Duraisingh |
No |
|
| Senegal P08.04 |
Senegal |
M Duraisingh |
Yes |
S |
| Senegal P26.04 |
Senegal |
M Duraisingh |
Yes |
R |
| Senegal P27.02 |
Senegal |
M Duraisingh |
Yes |
S |
| Senegal P60.02 |
Senegal |
M Duraisingh |
Yes |
R |
| Senegal Thi10.04 |
Senegal |
M Duraisingh |
No |
|
| Senegal Thi26.04 |
Senegal |
M Duraisingh |
Yes |
R |
| Senegal V56.04 |
Senegal |
J Daily |
No |
|
| Senegal P05.02 |
Senegal |
M Duraisingh |
Yes |
R |
| Senegal P06.02 |
Senegal |
M Duraisingh |
No |
|
| Senegal P09.04 |
Senegal |
M Duraisingh |
Yes |
S |
| Senegal P11.02 |
Senegal |
M Duraisingh |
No |
|
| Senegal P19.04 |
Senegal |
M Duraisingh |
Yes |
S |
| Senegal Thi15.04 |
Senegal |
M Duraisingh |
Yes |
|
| Senegal Thi28.04 |
Senegal |
M Duraisingh |
Yes |
R |
| Senegal V42.05 |
Senegal |
Dan Milner |
Yes |
S |
| D6 |
Sierra Leone |
MRA-285 |
Yes |
S |
| K1 |
Thailand |
MRA-159 |
Yes |
R |
| T9-94 |
Thailand |
MRA-153 |
Yes |
R |
| TM93C1088 |
Thailand |
MRA-207 |
Yes |
R |
| TM90C6B |
Thailand |
MRA-205 |
No |
|
| TM90C2A |
Thailand |
MRA-202 |
Yes |
|
| TM90C6A |
Thailand |
MRA-204 |
Yes |
|
| TM91C235 |
Thailand |
MRA-206 |
Yes |
|
| T116 |
Thailand |
S Thaitong/D Kyle |
No |
|
| TM327 |
Thailand |
S Thaitong/D Kyle |
Yes |
|
| TD194 |
Thailand |
S Thaitong/D Kyle |
No |
|
| PR145 |
Thailand |
S Thaitong/D Kyle |
Yes |
R |
| TM335 |
Thailand |
S Thaitong/D Kyle |
No |
|
| TM336 |
Thailand |
S Thaitong/D Kyle |
No |
|
| TM343 |
Thailand |
S Thaitong/D Kyle |
No |
|
| TM345 |
Thailand |
S Thaitong/D Kyle |
No |
|
| TM346 |
Thailand |
S Thaitong/D Kyle |
No |
|
| TM347 |
Thailand |
S Thaitong/D Kyle |
No |
|
| TD203 |
Thailand |
S Thaitong/D Kyle |
Yes |
R |
| TD257 |
Thailand |
S Thaitong/D Kyle |
Yes |
R |
| TM-4C8-2 |
Thailand |
S Thaitong/D Kyle |
Yes |
S |
| GA3 |
Thailand |
S Thaitong/D Kyle |
Yes |
R |
| GH2 |
Thailand |
S Thaitong/D Kyle |
Yes |
|
| MT/s1 |
Thailand |
MRA-822 |
Yes |
S |
| T2/C6 |
Thailand |
MRA-818 |
Yes |
|
| V1/S |
Vietnam |
MRA-176 |
Yes |
R |
|
|
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|
*Mixed infections identified using PCR-based assays of 12 high-frequency SNPs. |
||||
|
Neafsey et al. Genome Biology 2008 9:R171 doi:10.1186/gb-2008-9-12-r171 |
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