Table 1

Samples used for array validation and diversity analyses

Parasite line

Origin

Source

Single infection?*

Chloroquine resistant (R)/sensitive (S)


7G8

Brazil

MRA-152

Yes

ADA-2

Brazil

Sandra do Lago Moraes

Yes

9_411

Brazil

Alejandro Miguel Katzin

Yes

10_54

Brazil

Alejandro Miguel Katzin

Yes

608_88

Brazil

Alejandro Miguel Katzin

Yes

36_89

Brazil

Alejandro Miguel Katzin

Yes

51

Brazil

Alejandro Miguel Katzin

Yes

JST

Brazil

Sandra do Lago Moraes

Yes

356_89

Brazil

Alejandro Miguel Katzin

Yes

330_89

Brazil

Alejandro Miguel Katzin

Yes

207_89

Brazil

Alejandro Miguel Katzin

Yes

FCC-2/Hainan

China

MRA-733

Yes

S

Santa Lucia (El Salvador)

El Salvador

MRA-362

Yes

RO-33

Ghana

MRA-200

Yes

S

HB3

Honduras

MRA-155

Yes

IGHC14

India

Aditya Dash, Chetan Chitnis

Yes

RAJ116

India

Aditya Dash, Chetan Chitnis

Yes

Dd2

Indochina/Laos

MRA-156

Yes

R

KMWII

Kenya

MRA-821

Yes

CF04.008 10B

Malawi

Dan Milner

Yes

CF04.008 12G

Malawi

Dan Milner

Yes

CF04.008 1F

Malawi

Dan Milner

Yes

CF04.008 2G

Malawi

Dan Milner

Yes

CF04.008 7H

Malawi

Dan Milner

Yes

CF04.009 6D

Malawi

Dan Milner

Yes

CF04.010 10B

Malawi

Dan Milner

Yes

Malawi CF04.008

Malawi

Dan Milner

No

Malayan Camp R+

Malaysia

MRA-330

Yes

S

3D7

Netherlands

MRA-151

Yes

S

D10

Papua New Guinea

MRA-201

Yes

S

Senegal V34.04

Senegal

J Daily

Yes

S

Senegal P31.01

Senegal

J Daily

Yes

S

Senegal P51.02

Senegal

M Duraisingh

Yes

R

Senegal V35.04

Senegal

J Daily

Yes

S

Senegal P18.02

Senegal

M Duraisingh

No

Senegal P08.04

Senegal

M Duraisingh

Yes

S

Senegal P26.04

Senegal

M Duraisingh

Yes

R

Senegal P27.02

Senegal

M Duraisingh

Yes

S

Senegal P60.02

Senegal

M Duraisingh

Yes

R

Senegal Thi10.04

Senegal

M Duraisingh

No

Senegal Thi26.04

Senegal

M Duraisingh

Yes

R

Senegal V56.04

Senegal

J Daily

No

Senegal P05.02

Senegal

M Duraisingh

Yes

R

Senegal P06.02

Senegal

M Duraisingh

No

Senegal P09.04

Senegal

M Duraisingh

Yes

S

Senegal P11.02

Senegal

M Duraisingh

No

Senegal P19.04

Senegal

M Duraisingh

Yes

S

Senegal Thi15.04

Senegal

M Duraisingh

Yes

Senegal Thi28.04

Senegal

M Duraisingh

Yes

R

Senegal V42.05

Senegal

Dan Milner

Yes

S

D6

Sierra Leone

MRA-285

Yes

S

K1

Thailand

MRA-159

Yes

R

T9-94

Thailand

MRA-153

Yes

R

TM93C1088

Thailand

MRA-207

Yes

R

TM90C6B

Thailand

MRA-205

No

TM90C2A

Thailand

MRA-202

Yes

TM90C6A

Thailand

MRA-204

Yes

TM91C235

Thailand

MRA-206

Yes

T116

Thailand

S Thaitong/D Kyle

No

TM327

Thailand

S Thaitong/D Kyle

Yes

TD194

Thailand

S Thaitong/D Kyle

No

PR145

Thailand

S Thaitong/D Kyle

Yes

R

TM335

Thailand

S Thaitong/D Kyle

No

TM336

Thailand

S Thaitong/D Kyle

No

TM343

Thailand

S Thaitong/D Kyle

No

TM345

Thailand

S Thaitong/D Kyle

No

TM346

Thailand

S Thaitong/D Kyle

No

TM347

Thailand

S Thaitong/D Kyle

No

TD203

Thailand

S Thaitong/D Kyle

Yes

R

TD257

Thailand

S Thaitong/D Kyle

Yes

R

TM-4C8-2

Thailand

S Thaitong/D Kyle

Yes

S

GA3

Thailand

S Thaitong/D Kyle

Yes

R

GH2

Thailand

S Thaitong/D Kyle

Yes

MT/s1

Thailand

MRA-822

Yes

S

T2/C6

Thailand

MRA-818

Yes

V1/S

Vietnam

MRA-176

Yes

R


*Mixed infections identified using PCR-based assays of 12 high-frequency SNPs.

Neafsey et al. Genome Biology 2008 9:R171   doi:10.1186/gb-2008-9-12-r171

Open Data