Table 1 |
||||
|
Samples used for array validation and diversity analyses |
||||
|
Parasite line |
Origin |
Source |
Single infection?* |
Chloroquine resistant (R)/sensitive (S) |
|
|
||||
|
7G8 |
Brazil |
MRA-152 |
Yes |
|
|
ADA-2 |
Brazil |
Sandra do Lago Moraes |
Yes |
|
|
9_411 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
|
10_54 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
|
608_88 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
|
36_89 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
|
51 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
|
JST |
Brazil |
Sandra do Lago Moraes |
Yes |
|
|
356_89 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
|
330_89 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
|
207_89 |
Brazil |
Alejandro Miguel Katzin |
Yes |
|
|
FCC-2/Hainan |
China |
MRA-733 |
Yes |
S |
|
Santa Lucia (El Salvador) |
El Salvador |
MRA-362 |
Yes |
|
|
RO-33 |
Ghana |
MRA-200 |
Yes |
S |
|
HB3 |
Honduras |
MRA-155 |
Yes |
|
|
IGHC14 |
India |
Aditya Dash, Chetan Chitnis |
Yes |
|
|
RAJ116 |
India |
Aditya Dash, Chetan Chitnis |
Yes |
|
|
Dd2 |
Indochina/Laos |
MRA-156 |
Yes |
R |
|
KMWII |
Kenya |
MRA-821 |
Yes |
|
|
CF04.008 10B |
Malawi |
Dan Milner |
Yes |
|
|
CF04.008 12G |
Malawi |
Dan Milner |
Yes |
|
|
CF04.008 1F |
Malawi |
Dan Milner |
Yes |
|
|
CF04.008 2G |
Malawi |
Dan Milner |
Yes |
|
|
CF04.008 7H |
Malawi |
Dan Milner |
Yes |
|
|
CF04.009 6D |
Malawi |
Dan Milner |
Yes |
|
|
CF04.010 10B |
Malawi |
Dan Milner |
Yes |
|
|
Malawi CF04.008 |
Malawi |
Dan Milner |
No |
|
|
Malayan Camp R+ |
Malaysia |
MRA-330 |
Yes |
S |
|
3D7 |
Netherlands |
MRA-151 |
Yes |
S |
|
D10 |
Papua New Guinea |
MRA-201 |
Yes |
S |
|
Senegal V34.04 |
Senegal |
J Daily |
Yes |
S |
|
Senegal P31.01 |
Senegal |
J Daily |
Yes |
S |
|
Senegal P51.02 |
Senegal |
M Duraisingh |
Yes |
R |
|
Senegal V35.04 |
Senegal |
J Daily |
Yes |
S |
|
Senegal P18.02 |
Senegal |
M Duraisingh |
No |
|
|
Senegal P08.04 |
Senegal |
M Duraisingh |
Yes |
S |
|
Senegal P26.04 |
Senegal |
M Duraisingh |
Yes |
R |
|
Senegal P27.02 |
Senegal |
M Duraisingh |
Yes |
S |
|
Senegal P60.02 |
Senegal |
M Duraisingh |
Yes |
R |
|
Senegal Thi10.04 |
Senegal |
M Duraisingh |
No |
|
|
Senegal Thi26.04 |
Senegal |
M Duraisingh |
Yes |
R |
|
Senegal V56.04 |
Senegal |
J Daily |
No |
|
|
Senegal P05.02 |
Senegal |
M Duraisingh |
Yes |
R |
|
Senegal P06.02 |
Senegal |
M Duraisingh |
No |
|
|
Senegal P09.04 |
Senegal |
M Duraisingh |
Yes |
S |
|
Senegal P11.02 |
Senegal |
M Duraisingh |
No |
|
|
Senegal P19.04 |
Senegal |
M Duraisingh |
Yes |
S |
|
Senegal Thi15.04 |
Senegal |
M Duraisingh |
Yes |
|
|
Senegal Thi28.04 |
Senegal |
M Duraisingh |
Yes |
R |
|
Senegal V42.05 |
Senegal |
Dan Milner |
Yes |
S |
|
D6 |
Sierra Leone |
MRA-285 |
Yes |
S |
|
K1 |
Thailand |
MRA-159 |
Yes |
R |
|
T9-94 |
Thailand |
MRA-153 |
Yes |
R |
|
TM93C1088 |
Thailand |
MRA-207 |
Yes |
R |
|
TM90C6B |
Thailand |
MRA-205 |
No |
|
|
TM90C2A |
Thailand |
MRA-202 |
Yes |
|
|
TM90C6A |
Thailand |
MRA-204 |
Yes |
|
|
TM91C235 |
Thailand |
MRA-206 |
Yes |
|
|
T116 |
Thailand |
S Thaitong/D Kyle |
No |
|
|
TM327 |
Thailand |
S Thaitong/D Kyle |
Yes |
|
|
TD194 |
Thailand |
S Thaitong/D Kyle |
No |
|
|
PR145 |
Thailand |
S Thaitong/D Kyle |
Yes |
R |
|
TM335 |
Thailand |
S Thaitong/D Kyle |
No |
|
|
TM336 |
Thailand |
S Thaitong/D Kyle |
No |
|
|
TM343 |
Thailand |
S Thaitong/D Kyle |
No |
|
|
TM345 |
Thailand |
S Thaitong/D Kyle |
No |
|
|
TM346 |
Thailand |
S Thaitong/D Kyle |
No |
|
|
TM347 |
Thailand |
S Thaitong/D Kyle |
No |
|
|
TD203 |
Thailand |
S Thaitong/D Kyle |
Yes |
R |
|
TD257 |
Thailand |
S Thaitong/D Kyle |
Yes |
R |
|
TM-4C8-2 |
Thailand |
S Thaitong/D Kyle |
Yes |
S |
|
GA3 |
Thailand |
S Thaitong/D Kyle |
Yes |
R |
|
GH2 |
Thailand |
S Thaitong/D Kyle |
Yes |
|
|
MT/s1 |
Thailand |
MRA-822 |
Yes |
S |
|
T2/C6 |
Thailand |
MRA-818 |
Yes |
|
|
V1/S |
Vietnam |
MRA-176 |
Yes |
R |
|
|
||||
|
*Mixed infections identified using PCR-based assays of 12 high-frequency SNPs. |
||||
|
Neafsey et al. Genome Biology 2008 9:R171 doi:10.1186/gb-2008-9-12-r171 |
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