Table 4 |
|||||
|
RefSeq genes flanking the ENCs |
|||||
|
ENC |
Interval (Mb) |
Left gene |
Position in HSA (hg17) or MMU (rheMac2) |
Right gene |
Position in HSA (hg17) or MMU (rheMac2) |
|
|
|||||
|
Platirrhini |
|||||
|
LLA7 (HSA8) |
0.534 |
ASPH |
Chr8:62,699,652-62,789,681 |
FAM77D |
Chr8:63,324,055-64,074,765 |
|
Catarrhini |
|||||
|
MMU2 (HSA3) |
3.607 |
C3orf57 |
Chr3:162,545,283-162,572,573 |
SI |
Chr3:166,179,388-166,278,984 |
|
MMU4 (HSA6) |
0.772 |
UTRN |
Chr6:144,654,566-145,215,861 |
EPM2A |
Chr6:145,988,141-146,098,684 |
|
MMU13 (HSA2p) |
0.097 |
RNF103 |
Chr2:86,742,174-86,762,636 |
RMD5A |
Chr2:86,859,351-86,914,090 |
|
MMU14 (HSA11) |
1.213 |
MMP26 |
Chr11:4,966,000-4,970,233 |
C11orf42 |
Chr11:6,183,374-6,188,935 |
|
MMU15 (HSA9) |
0.423 |
PTGS1 |
Chr9:122,212,783-122,237,535 |
PDCL |
Chr9:122,660,178-122,670,394 |
|
MMU12 (HSA2q) |
0.485 |
HNMT |
Chr2:138,555,540-138,607,665 |
LOC339745 |
Chr2:139,093,103-139,164,532 |
|
MMU17 (HSA13) |
4.888 |
PCDH20 |
Chr13:60,881,822-60,887,282 |
PCDH9 |
Chr13:65,774,968-66,702,464 |
|
MMU18 (HSA18) |
0.247 |
C18orf54 |
Chr18:50,139,169-50,162,379 |
C18orf26 |
Chr18:50,409,388-50,417,722 |
|
NLE14 (HSA11) |
2.746 |
CHORDC1 |
Chr11:89,574,265-89,595,854 |
MTNR1B |
Chr11:92,342,437-92,355,596 |
|
PPY11 (HSA11) |
0.203 |
DBX1 |
Chr11:20,134,336-20,138,446 |
HTATIP2 |
Chr11:20,341,924-20,361,904 |
|
HSA |
|||||
|
HSA3 (MMU2) |
0.641 |
EPHA3 in HSA (not annotated in |
Chr3:89,239,364-89,613,972 |
PROS1 (L31380 in MMU) |
Chr3:95,074,647-95,175,395 |
|
MMU) |
(MMU2:13,335,593-13,694,578) |
(Chr2:14,335,824-14,391,596) |
|||
|
HSA6 (MMU4) |
0.897 |
PRIM2A in HAS (not annotated in |
Chr6:57,290,381-57,621,334 |
KHDRBS2 in HAS (not annotated in |
Chr6:62,447,824-63,054,091 |
|
MMU) |
(2 dup in MMU: |
MMU) |
(3 dup in MMU: |
||
|
MMU4:56,935,673-57,245,600 |
Chr4:58,142,819-58,698,705 |
||||
|
MMU11:20,043,342-20,044,345) |
Chr17:3,473,312-3,473,395 |
||||
|
Chr8:138,072,498-138,196,040) |
|||||
|
HSA11 (MMU14) |
1.280 |
LRRC55 in HAS (not annotated in |
Chr11:56,705,797-56,714,154 |
PTPRJ in HAS (not annotated in MMU) |
Chr11:47,958,689-48,146,246 |
|
MMU) |
(MMU14:16,226,175-16,234,557) |
(Chr14:23,931,871-24,124,487) |
|||
|
|
|||||
|
Position of the most proximal and distal genes with respect to each ENC seeding region, calculated in the reference genome (see text). The interval size, in Mb, between the two genes is reported in column 2. |
|||||
|
Lomiento et al. Genome Biology 2008 9:R173 doi:10.1186/gb-2008-9-12-r173 |
|||||
