Table 1

Nucleotidic overlap of RNA-Seq reads, G-Mo.R-Se covtigs and G-Mo.R-Se models with different genomic compartments relative to the reference annotation

Genomic compartment relative to the reference annotation (%)


Exonic: 41,603,635 nucleotides

Intronic: 184,047,761 nucleotides

Intergenic: 271,857,375 nucleotides




Specificity

Sensitivity

Specificity

Sensitivity

Specificity

Sensitivity


Reads: 73,580,625 nucleotides

37

66

40

16

23

6

Covtigs: 38,484,212 nucleotides

60

56

20

4

20

3

Models: 22,213,316 nucleotides

80

43

5

1

15

1


Specificity reflects the percentage of nucleotides in reads/covtigs/models falling in the compartment; sensitivity reflects the percentage of nucleotides in the genomic compartment overlapped by reads/covtigs/models.

Denoeud et al. Genome Biology 2008 9:R175   doi:10.1186/gb-2008-9-12-r175

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