Table 4

Alternative splicing events detected in cDNAs, all G-Mo.R-Se models, and CDS portions of G-Mo.R-Se models

cDNAs: 7,895 loci

Models (all): 19,486 loci

Models (CDS): 12,341 loci




Number (%)

Number (%)

Number (%)

Events common to cDNAs and models

% of cDNA events


Alternative acceptor/donor

690 (73.1%)

7,405 (62.5%)

2,988 (58.0%)

156

22.6

Skipped

250 (26.5%)

3,656 (30.9%)

1,677 (32.5%)

18

7.2

Mutually exclusive

4 (0.4%)

781 (6.6%)

487 (9.5%)

1

25.0

Intron retention

1,227

-

-

-

-

Total

2,171 (944 without IR)

11,842

5,152

175

18.5

Total number of loci with alternative splicing (% of all identified loci)

783 (9.9%) (598 without IR)

1,602 (8.2%)

1,029 (8.3%)

-

-


Denoeud et al. Genome Biology 2008 9:R175   doi:10.1186/gb-2008-9-12-r175

Open Data