Table 1

GO term frequencies (excluding 'Unknown') for specific groups of transcripts

Transcripts shown in Figure 4


GO Term

4a

4b

4c

4d

4e

4f

Constitutive


Amine binding

0.8%

0.3%

0.2%

Carbohydrate binding

0.4%

0.7%

1.3%

Chromatin binding

1.0%

0.8%

0.7%

0.2%

Cofactor binding

1.9%

1.2%

2.2%

0.3%

3.5%

Copper chaperone activity

0.2%

Drug binding

0.3%

Drug transporter activity

1.0%

0.8%

0.3%

0.2%

Enzyme activator activity

0.4%

2.3%

0.3%

0.2%

Enzyme inhibitor activity

2.3%

3.3%

2.1%

0.9%

Extracellular matrix structural constituent

0.4%

1.1%

0.3%

0.6%

GTPase regulator activity

0.4%

2.3%

0.7%

0.2%

Helicase activity

2.9%

0.4%

Hydrolase activity

6.8%

8.3%

23.3%

14.1%

11.3%

6.3%

8.2%

Ion binding

12.6%

9.1%

25.6%

15.2%

13.0%

6.3%

12.3%

Isomerase activity

1.9%

0.8%

2.3%

1.1%

0.3%

1.5%

Kinase regulator activity

0.3%

0.2%

Kinetochore binding

0.3%

Ligase activity

1.0%

2.4%

1.1%

0.3%

1.7%

Lipid binding

1.0%

1.6%

2.2%

2.1%

1.5%

Lyase activity

1.9%

0.8%

2.3%

3.3%

2.4%

1.1%

Metal cluster binding

0.6%

Microtubule motor activity

1.0%

0.8%

0.3%

Nucleic acid binding

10.7%

12.3%

2.3%

6.5%

5.8%

12.5%

8.2%

Nucleotide binding

8.7%

10.7%

4.7%

7.6%

10.6%

12.5%

11.4%

Oxidoreductase activity

6.8%

4.7%

7.0%

10.9%

4.1%

6.3%

7.6%

Pattern binding

0.4%

0.2%

Peptide binding

1.0%

0.4%

2.3%

0.6%

Peroxidase activity

0.4%

1.0%

0.6%

Phosphatase regulator activity

1.1%

0.3%

0.2%

Protein binding

16.5%

17.4%

9.3%

5.4%

8.6%

18.8%

12.7%

RNA polymerase II transcription factor activity

0.2%

Signal transducer activity

3.9%

2.0%

2.3%

1.1%

2.4%

2.8%

Small protein conjugating enzyme activity

0.4%

0.2%

Structural constituent of cell wall

1.9%

2.4%

2.3%

3.3%

1.7%

1.7%

Structural constituent of cytoskeleton

0.2%

Structural constituent of ribosome

0.4%

0.7%

0.2%

Substrate-specific transporter activity

2.9%

3.6%

2.3%

2.2%

5.8%

6.3%

2.2%

Tetrapyrrole binding

2.9%

1.2%

2.3%

3.3%

2.1%

6.3%

1.5%

Transcription activator activity

0.3%

Transcription cofactor activity

0.4%

Transcription factor activity

2.4%

1.0%

0.9%

Transferase activity

7.8%

6.3%

2.3%

9.8%

14.0%

6.3%

9.7%

Translation factor activity, nucleic acid binding

0.4%

12.5%

0.4%

Translation repressor activity

0.4%

Transmembrane transporter activity

2.9%

4.0%

2.3%

3.3%

4.8%

6.3%

1.9%

Two-component response regulator activity

1.0%

0.4%

0.4%

Vitamin binding

2.2%

0.9%

Xenobiotic transporter activity

0.4%

0.2%


Entries in bold are the most highly represented.

Ma et al. Genome Biology 2008 9:R181   doi:10.1186/gb-2008-9-12-r181

Open Data