|
Amino acids significantly preferred (-) or avoided (+) at 3' (top rows) and 5' (bottom rows) exon ends of C. neoformans compared to human |
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| Amino acids*† |
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|
|
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| A |
C |
D |
E |
F |
G |
H |
I |
K |
L4 |
L2 |
M |
N |
P |
Q |
R4 |
R2 |
S4 |
S2 |
T |
V |
W |
Y |
Species (number of exons) |
|
|
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| +3 |
-7 |
-3 |
-2 |
-1 |
-5 |
-6 |
+2 |
+1 |
-4 |
+4 |
Human (178,438): 3' |
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| -6 |
+1 |
-2 |
+4 |
-7 |
-1 |
+3 |
-3 |
+6 |
-5 |
+2 |
+5 |
-4 |
C. neoformans (28,446): 3' |
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| +2 |
-4 |
-5 |
+7 |
-3 |
-1 |
-2 |
-8 |
-6 |
+1 |
+4 |
+3 |
-7 |
+5 |
+6 |
Human (178438): 5' |
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| -9 |
-5 |
-7 |
-3 |
-1 |
-6 |
+2 |
+3 |
-4 |
+1 |
-8 |
-10 |
-2 |
C. neoformans (28,446): 5' |
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*Indices signify rank order of slope coefficients, separately for negative and positive trends. †L2, R2, S2 and L4, R4, S4 signify the two-fold and four-fold degenerate blocks of leucine, arginine, and serine, respectively. | |||||||||||||||||||||||
Warnecke et al. Genome Biology 2008 9:R29 doi:10.1186/gb-2008-9-2-r29 |
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