|
Transposable element content in neo-X and neo-Y chromosome contigs |
|||||
| Genomic region* |
Retroelements |
DNA transposons |
% of total sequence |
||
|
|
|
||||
| Number |
Length (bp) |
Number |
Length (bp) |
||
|
|
|||||
| neo-X linked |
|||||
| Cyp6t3 |
7 |
931 |
1 |
252 |
0.62 |
| CG11228 |
12 |
6,153 |
0 |
0 |
2.88 |
| CG3167 |
5 |
722 |
2 |
291 |
0.51 |
| CG2269 |
12 |
1,114 |
1 |
372 |
0.68 |
| RnrS |
12 |
2,676 |
1 |
74 |
1.25 |
| dpld |
8 |
1,547 |
0 |
0 |
0.71 |
| CG3700 |
19 |
2,852 |
0 |
0 |
1.36 |
| Total |
75 |
15,995 |
5 |
989 |
1.16 |
| neo-Y linked |
|||||
| Cyp6t3 |
51 |
27,272 |
2 |
166 |
17.94 |
| CG11228 |
49 |
19,213 |
2 |
125 |
13.59 |
| CG3167 |
43 |
47,660 |
4 |
1,068 |
29.12 |
| CG2269 |
25 |
23,855 |
3 |
555 |
15.81 |
| RnrS |
50 |
27,792 |
5 |
1,015 |
17.35 |
| dpld |
59 |
28,969 |
10 |
2,337 |
21.76 |
| CG3700 |
65 |
41,649 |
4 |
12,119 |
23.79 |
| Total |
342 |
216,410 |
30 |
17,385 |
20.28 |
|
*Genomic regions are named after probes used to isolate BAC clones. | |||||
Bachtrog et al. Genome Biology 2008 9:R30 doi:10.1186/gb-2008-9-2-r30 |
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