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Text-mining assisted regulatory annotation

Stein Aerts1,2 email, Maximilian Haeussler3 email, Steven van Vooren4 email, Obi L Griffith5 email, Paco Hulpiau6 email, Steven JM Jones5 email, Stephen B Montgomery7 email, Casey M Bergman8 email and The Open Regulatory Annotation Consortium email

1Laboratory of Neurogenetics, Department of Molecular and Developmental Genetics, VIB, Leuven, B-3000, Belgium

2Department of Human Genetics, Katholieke Universiteit Leuven School of Medicine, Herestraat, Leuven, B-3000, Belgium

3Institut de Neurosciences A Fessard, Centre National de la Rechere Scientifique, Gif-sur-Yvette, 91 198, France

4Department of Electrical Engineering, Katholieke Universiteit Leuven, Heverlee, B-3001, Belgium

5Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, V5Z 4E6, Canada

6VIB Department for Molecular Biomedical Research, Ghent University, Ghent, 9052, Belgium

7Wellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK

8Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester, M13 9PT, UK

author email corresponding author email

Genome Biology 2008, 9:R31doi:10.1186/gb-2008-9-2-r31

Published: 13 February 2008

Subject areas: Genome studies, Bioinformatics


Additional files

Additional data file 1:

The UCSC genome BED formatted file lists the chromosome, start coordinate, stop coordinate and PubMed identifier of text-extracted sequences on UCSC genome browser assemblies.

Format: BED Size: 10KB Download file

Additional data file 2:

The UCSC genome BED formatted file lists the chromosome, start coordinate, stop coordinate and PubMed identifier of text-extracted sequences on UCSC genome browser assemblies.

Format: BED Size: 86KB Download file

Additional data file 3:

The UCSC genome BED formatted file lists the chromosome, start coordinate, stop coordinate and PubMed identifier of text-extracted sequences on UCSC genome browser assemblies.

Format: BED Size: 69KB Download file

Additional data file 4:

The UCSC genome BED formatted file lists the chromosome, start coordinate, stop coordinate and PubMed identifier of text-extracted sequences on UCSC genome browser assemblies.

Format: BED Size: 1KB Download file

Additional data file 5:

The UCSC genome BED formatted file lists the chromosome, start coordinate, stop coordinate and PubMed identifier of text-extracted sequences on UCSC genome browser assemblies.

Format: BED Size: 32KB Download file

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