Genome Biology

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Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes

Pär G Engström, David Fredman and Boris Lenhard*

Genome Biology 2008, 9:R34 doi:10.1186/gb-2008-9-2-r34

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Research article   Open Access Highly Accessed

Functional conservation of a forebrain enhancer from the elephant shark (Callorhinchus milii ) in zebrafish and mice

Ryan B MacDonald, Mélanie Debiais-Thibaud, Kyle Martin, Luc Poitras, Boon-Hui Tay, Byrappa Venkatesh, Marc Ekker BMC Evolutionary Biology 2010, 10:157 (26 May 2010)

Research   Open Access

Translog, a web browser for studying the expression divergence of homologous genes

Xianjun Dong, Altuna Akalin, Yogita Sharma, Boris Lenhard BMC Bioinformatics 2010, 11(Suppl 1):S59 (18 January 2010)

Software   Open Access Highly Accessed

Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes

Xianjun Dong, David Fredman, Boris Lenhard Genome Biology 2009, 10:R86 (21 August 2009)

Synorth is a web resource for exploring and categorizing the syntenic relationships in gene regulatory blocks across multiple genomes.

Methodology article   Open Access Highly Accessed

Profile analysis and prediction of tissue-specific CpG island methylation classes

Christopher Previti, Oscar Harari, Igor Zwir, Coral del Val BMC Bioinformatics 2009, 10:116 (21 April 2009)

Research   Open Access Highly Accessed

Transcriptional features of genomic regulatory blocks

Altuna Akalin, David Fredman, Erik Arner, Xianjun Dong, Jan Bryne, Harukazu Suzuki, Carsten O Daub, Yoshihide Hayashizaki, Boris Lenhard Genome Biology 2009, 10:R38 (19 April 2009)

This article is part of a collection on FANTOM4

CAGE tag mapping of transcription start sites across different human tissues shows that genomic regulatory blocks have unique features that are the likely cause of their ability to respond to regulatory inputs from very long distances.

Research article   Open Access

Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes

Flavio Mignone, Anna Anselmo, Giacinto Donvito, Giorgio P Maggi, Giorgio Grillo, Graziano Pesole BMC Genomics 2008, 9:277 (11 June 2008)