Additional data file 2.
After determining which proteins were to be considered for analysis (as described in Materials and methods and for Additional Data File 1), the measured Cm/CA ratios were normalized to the measured value of histone H2B in each independent experiment. The normalized values were then log normal (Ln) transformed (mean Ln transformed Cm/CA ratio, experiments [Exps] 1 to 4) to reduce the spread of the data. The means of the Ln transformed ratios for each protein identity were then calculated (mean Ln transformed values). The relative standard deviations of the peptide ratios for each analysis are included.
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Silverman et al. Genome Biology 2008 9:R35 doi:10.1186/gb-2008-9-2-r35