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Abundance and sequence diversity of DINE-1 in 12 Drosophila species |
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| Species |
subTIR* |
Insertion preference |
No. of copies† |
Average % identity (STD)‡ |
|
|
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| D. melanogaster |
ATACCCGTTACTC |
TT |
355 |
89.66 (3.57) |
| D. simulans |
ATACCCGTTACTC |
TT |
478 |
90.06 (3.36) |
| D. sechellia |
ATACCCGTTACTC |
TT |
502 |
90.16 (3.38) |
| D. yakuba |
ATACCCGTTACTC |
TT |
5,424 |
96.43 (3.31) |
| D. erecta |
ATACCCGTTACTC |
TT |
1,013 |
91.08 (3.41) |
| D. ananassae |
TATACCCTTGCAG |
TT |
5,027 |
97.15 (3.32) |
| D. persimilis |
TATACCCGATACT |
TT |
1,103 |
96.63 (3.29) |
| D. pseudoobscura |
TATACCCGATACT |
TT |
1,047 |
95.39 (4.24) |
| D. willistoni type 1 |
TATACCATACACC |
TT |
2,396 |
96.70 (4.13) |
| D. willistoni type 2 |
TATACCCTTGCAA |
TT |
2,828 |
96.13 (3.47) |
| D. willistoni type 3 |
TATACCCTTGCAG |
TT |
1,073 |
96.69 (2.93) |
| D. mojavensis |
ATACCCTGAACCC |
TT |
5,190 |
93.17 (4.64) |
| D. virilis |
ATACCCTGAACCC |
TT |
3,222 |
94.40 (3.20) |
| D. grimshawi |
TACCCTGAACCCA |
TT |
334 |
87.89 (4.34) |
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*subTIR of D. mojavensis is from the 5' side; the 3' subTIR has a single mismatch (Figure 2). †Number of hits found by BLAST search using block A consensus of DINE-1 of each species. Only hits > 100 bp in length were included. ‡Means (and standard deviations (STD) in parentheses) of percentage identity between the DINE-1 consensus to all BLAST hits of block A. | ||||
Yang and Barbash Genome Biology 2008 9:R39 doi:10.1186/gb-2008-9-2-r39 |
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