Method
Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza
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* Corresponding author: Rod A Wing rwing@ag.arizona.edu
1 Arizona Genomics Institute, Department of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA
2 Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
3 Department of Agronomy, Purdue University, West Lafayette, Indiana 47907, USA
4 Department of Horticulture, Purdue University, West Lafayette, Indiana 47907, USA
5 Genome Technology Branch, NHGRI, National Institutes of Health, Bethesda, Maryland, 20892, USA
6 Department of Biomedical Engineering, Stony Brook University, Stony Brook, New York 11794, USA
7 Arizona Genomics Computational Laboratory, University of Arizona, Tucson, Arizona 85721, USA
8 USDA-ARS NAA Plant, Soil and Nutrition Laboratory Research Unit, Ithaca, New York 14853, USA
Genome Biology 2008, 9:R45 doi:10.1186/gb-2008-9-2-r45
Published: 28 February 2008Additional files
Additional data file 1:
SyMAP display details.
Format: DOC Size: 1.7MB Download file
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Additional data file 2:
Distribution of CB units from the O. sativa reference genome aligned contigs to each chromosome of 12 OMAP phase I physical maps.
Format: DOC Size: 31KB Download file
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Additional data file 3:
Correlation of genome size and repeat content in the genus Oryza.
Format: DOC Size: 102KB Download file
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Additional data file 4:
Comparison of MITE compositions in 12 OMAP genomes and the O. sativa genome.
Format: DOC Size: 85KB Download file
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Additional data file 5:
Distribution of OMAP non-redundant SSR by motif types.
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Additional data file 6:
Repeat association analysis for TAA and CAA motifs of O. ridleyi and O. granulata and BLAST analysis of CAA-BESs.
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Additional data file 7:
Comparison of the SSR length and sequence compositions of OMAP SSR motifs.
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Additional data file 8:
SNVs and INDELs found between the BESs for O. rufipogon, O. nivara, O. glaberrima, O. punctata and the IRGSP V.4 pseudomolecules (or the TIGR V.4 pseudomolecules).
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Additional data file 9:
Wild rice BESs and variation data at Gramene.
Format: DOC Size: 324KB Download file
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Additional data file 10:
The strategy of repeat analysis and classification using the OMAP BES resources.
Format: DOC Size: 31KB Download file
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