 MethodConstruction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus OryzaHyeRan Kim1 1Arizona Genomics Institute, Department of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA 2Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA 3Department of Agronomy, Purdue University, West Lafayette, Indiana 47907, USA 4Department of Horticulture, Purdue University, West Lafayette, Indiana 47907, USA 5Genome Technology Branch, NHGRI, National Institutes of Health, Bethesda, Maryland, 20892, USA 6Department of Biomedical Engineering, Stony Brook University, Stony Brook, New York 11794, USA 7Arizona Genomics Computational Laboratory, University of Arizona, Tucson, Arizona 85721, USA 8USDA-ARS NAA Plant, Soil and Nutrition Laboratory Research Unit, Ithaca, New York 14853, USA
Genome Biology 2008, 9:R45doi:10.1186/gb-2008-9-2-r45
Subject areas: Evolution, Genetics, Genome studies, Plant biology Additional filesAdditional data file 1: SyMAP display details. Format: DOC Size: 1.7MB Download file This file can be viewed with: Microsoft Word Viewer Additional data file 2: Distribution of CB units from the O. sativa reference genome aligned contigs to each chromosome of 12 OMAP phase I physical maps. Format: DOC Size: 31KB Download file This file can be viewed with: Microsoft Word Viewer Additional data file 3: Correlation of genome size and repeat content in the genus Oryza. Format: DOC Size: 102KB Download file This file can be viewed with: Microsoft Word Viewer Additional data file 4: Comparison of MITE compositions in 12 OMAP genomes and the O. sativa genome. Format: DOC Size: 85KB Download file This file can be viewed with: Microsoft Word Viewer Additional data file 5: Distribution of OMAP non-redundant SSR by motif types. Format: DOC Size: 27KB Download file This file can be viewed with: Microsoft Word Viewer Additional data file 6: Repeat association analysis for TAA and CAA motifs of O. ridleyi and O. granulata and BLAST analysis of CAA-BESs. Format: DOC Size: 40KB Download file This file can be viewed with: Microsoft Word Viewer Additional data file 7: Comparison of the SSR length and sequence compositions of OMAP SSR motifs. Format: DOC Size: 41KB Download file This file can be viewed with: Microsoft Word Viewer Additional data file 8: SNVs and INDELs found between the BESs for O. rufipogon, O. nivara, O. glaberrima, O. punctata and the IRGSP V.4 pseudomolecules (or the TIGR V.4 pseudomolecules). Format: DOC Size: 30KB Download file This file can be viewed with: Microsoft Word Viewer Additional data file 9: Wild rice BESs and variation data at Gramene. Format: DOC Size: 324KB Download file This file can be viewed with: Microsoft Word Viewer Additional data file 10: The strategy of repeat analysis and classification using the OMAP BES resources. Format: DOC Size: 31KB Download file This file can be viewed with: Microsoft Word Viewer |
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