|
Summary of BAC end sequences of 12 Oryza species |
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| Species |
Genome type |
Genome size (Mb)* |
No. of GenBank submissions |
Average length after trim (in GenBank) |
Total sequenced length (in GenBank) |
Genome coverage |
No. of forward reads |
No. of reverse reads |
No. of clones with paired reads (% of total BES) |
|
|
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| O. nivara |
AA |
448 |
106,124 |
665 bp |
~ 71 Mb |
16% |
53,450 |
52,674 |
51,820 (98%) |
| O. rufipogon |
AA |
439 |
70,982 |
704 bp |
~ 50 Mb |
11% |
35,473 |
35,509 |
34,747 (98%) |
| O. glaberrima |
AA |
357 |
66,821 |
590 bp |
~ 39 Mb |
11% |
33,456 |
33,365 |
30,885 (92%) |
| O. punctata |
BB |
425 |
68,384 |
710 bp |
~ 49 Mb |
11% |
35,051 |
33,333 |
32,284 (94%) |
| O. officinalis |
CC |
651 |
101,091 |
717 bp |
~ 72 Mb |
11% |
49,972 |
49,052 |
47,197 (93%) |
| O. minuta |
BBCC |
1,124 |
169,460 |
559 bp |
~ 95 Mb |
8% |
85,466 |
83,994 |
82,248 (97%) |
| O. alta |
CCDD |
1,008 |
128,732 |
586 bp |
~ 75 Mb |
7% |
64,365 |
64,367 |
58,217 (90%) |
| O. australiensis |
EE |
965 |
135,769 |
625 bp |
~ 85 Mb |
9% |
67,245 |
68,524 |
64,081 (94%) |
| O. brachyantha |
FF |
362 |
67,364 |
672 bp |
~ 45 Mb |
13% |
34,009 |
33,355 |
32,258 (96%) |
| O. granulata |
GG |
882 |
138,171 |
674 bp |
~ 93 Mb |
11% |
69,962 |
68,209 |
66,434 (96%) |
| O. ridleyi |
HHJJ |
1,283 |
204,729 |
632 bp |
~ 129 Mb |
10% |
102,640 |
102,089 |
98,160 (96%) |
| O. coarctata |
HHKK |
771† |
195,285 |
661 bp |
~ 129 Mb |
17% |
100,341 |
94,944 |
91,853 (94%) |
|
|
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| Total/Average |
1,452,912 |
650 bp |
~ 932 Mb |
11% |
731,430 |
719,415 |
690,184 (95%) |
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*From [30]. †By K Arumuganathan using flow cytometric methods as previously described [30]. | |||||||||