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Summary of alignments of 12 OMAP Phase I FPC maps to the O. sativa RefSeq |
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| Not aligned contig |
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| Species |
No. of contigs aligned |
Total CB aligned |
Total size aligned* (Mb) |
No. of clones in aligned contig |
No. of BESs aligned |
Average identity of BES alignments |
E-value of BES alignments |
CB/contig (average) |
No. of clones/contig (average) |
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|
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| O. nivara |
368 (81%) |
371,561 (97%) |
490 (109%) |
48,424 (99%) |
63,293 (60%) |
97% |
e-237 to e-33 |
150 |
3 |
| O. rufipogon |
581 (91%) |
399,346 (98%) |
503 (115%) |
31,398 (99%) |
36,725 (52%) |
97% |
e-224 to e-57 |
133 |
6 |
| O. glaberrima |
860 (95%) |
302,696 (98%) |
378 (106%) |
30,708 (99%) |
33,356 (50%) |
97% |
e-213 to e-42 |
157 |
6 |
| O. punctata |
462 (94%) |
332,224 (98%) |
402 (95%) |
31,674 (97%) |
25,842 (38%) |
93% |
e-183 to e-30 |
286 |
38 |
| O. officinalis |
617 (88%) |
448,477 (97%) |
547 (84%) |
44,194 (99%) |
25,699 (25%) |
93% |
e-204 to e-16 |
159 |
6 |
| O. minuta |
3,073 (78%) |
833,710 (83%) |
1,075 (96%) |
66,277 (86%) |
46,227 (27%) |
93% |
e-173 to e-07 |
192 |
12 |
| O. alta |
1,571 (63%) |
671,625 (77%) |
819 (81%) |
50,281 (83%) |
10,770 (8%) |
93% |
e-193 to e-02 |
216 |
11 |
| O. australiensis |
787 (78%) |
630,836 (91%) |
770 (80%) |
60,538 (94%) |
20,429 (15%) |
93% |
e-182 to e-03 |
279 |
17 |
| O. brachyantha |
351 (83%) |
205,608 (96%) |
267 (74%) |
30,717 (99%) |
25,387 (38%) |
91% |
e-175 to e-18 |
135 |
5 |
| O. granulata |
1,444 (61%) |
814,383 (76%) |
904 (102%) |
50,117 (81%) |
18,785 (14%) |
91% |
e-179 to e-05 |
289 |
13 |
| O. ridleyi |
1,756 (80%) |
1,123,902 (92%) |
1,281 (100%) |
94,565 (95%) |
37,300 (18%) |
92% |
e-170 to e-06 |
213 |
11 |
| O. coarctata |
1,002 (80%) |
579,809 (95%) |
713 (92%) |
89,775 (99%) |
53,920 (28%) |
92% |
e-184 to e-07 |
130 |
4 |
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*Deduced from [1 CB unit size from Table 2 × Total CB unit aligned]. | |||||||||
Kim et al. Genome Biology 2008 9:R45 doi:10.1186/gb-2008-9-2-r45 |
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