Table 1

Genomes and ESTs used in the analysis

Genome name

Kingdom

Reference

ESTs


Danio rerio

Animal

Assembly Zv6, Sanger Institute [66]

Genbank 06/15/07

Takifugu rubripes

Animal

[67]

Genbank 06/22/07

Branchistoma floridae

Animal

JGI [60] (v1.0)

Genbank 06/22/07

Ciona savignyi

Animal

Broad Institute [58] (ci1.0)

Genbank 06/15/07

Ciona intestinalis

Animal

[68]

Genbank 06/15/07

Nematostella vectensis

Animal

[69]

Genbank 06/22/07

Strongylocentrotus purpuratus

Animal

[70]

Genbank 06/27/07

Drosophila melanogaster

Animal

[71]

Genbank 06/15/07

Aedes aegypti

Animal

[72]

Vectorbase [61,73]

Anopheles gambiae.

Animal

[74]

Vectorbase [61,73]

Apis mellifera

Animal

[75]

Genbank 06/18/07

Caenorhabditis elegans

Animal

[76]

Genbank 02/1/07

Schistosoma mansoni

Animal

TIGR/JCVI [59]

Genbank 06/22/07

Rhizopus oryzae

Fungi

Broad Institute [58]

Genbank 06/15/07 + Broad Institute [58]

Cryptococcus neoformans JEC21

Fungi

[15]

Genbank 06/19/07

Ustilago maydis

Fungi

[77]

Genbank 06/15/07

Schizosaccharomyces pombe

Fungi

[78]

Genbank 01/14/08

Saccharomyces cerevisiae

Fungi

[79]

Genbank 01/14/08

Neurospora crassa

Fungi

[80]

Genbank 06/15/07

Magnaporthe grisea 70-15

Fungi

[81]

Genbank 06/15/07

Stagnospora nodorum

Fungi

Broad Institute [58]

Genbank 06/15/07

Aspergillus flavus NRRL3357

Fungi

TIGR/JCVI [59], GenBank AAIH00000000

Genbank 06/15/07

Aspergillus nidulans

Fungi

[82]

Genbank 06/15/07

Histoplasma capsulatum

Fungi

Broad Institute [58]

Genbank 06/15/07

Coccidioides posadasii

Fungi

TIGR/JCVI [59]

Genbank 06/15/07

Coccidioides immitis RS

Fungi

Broad Institute [58]

Genbank 06/15/07

Sclerotinia sclerotiorum 1980

Fungi

Broad Institute [58]

Genbank 06/15/07 + Broad Institute [58]

Dictyostelium discoideum

Protist

[83]

Genbank 06/15/07

Populus trichocarpa

Plant

[84]

Genbank 06/18/07

Arabidopsis thaliana

Plant

[85]

Genbank 06/16/07

Oryza sativa

Plant

[86]

Genbank 06/15/07

Physcomitrella patens

Plant

JGI [60] (v1.1)

Genbank 06/28/07

Chlamydomonas reinhardtii

Plant

JGI [60] (v3.0)

Genbank 06/18/07

Ostreococcus lucimarinus

Plant

[87]

JGI [60]

Phytophthora infestans

Protist

Broad Institute [58] (C Nusbaum, personal communication)

Genbank 06/15/07

Phytophthora sojae

Protist

[88]

Genbank 06/15/07

Plasmodium yoelii

Protist

[89]

Genbank 06/15/07

Plasmodium falciparum 3D7

Protist

[90]

Genbank 06/19/07

Paramecium tetraurelia

Protist

[91]

Genbank 06/15/07

Tetrahymena thermophila

Protist

[92]

Genbank 06/19/07

Entamoeba hystolitica

Protist

[4]

Genbank 06/18/07

Phaeodactylum tricornutum

Protist

JGI [60]

Genbank 06/28/07


McGuire et al. Genome Biology 2008 9:R50   doi:10.1186/gb-2008-9-3-r50

Open Data