Table 2

Numbers of ESTs, transcripts, and loci

Kingdom

Total ESTs*

Spliced. Filtered ESTs

Transcripts

Loci§


D. rerio

Animal

1350,105

556,175

76,066

33,338

T. rubripes

Animal

26,069

14,197

5,890

4,988

B. floridae

Animal

277,538

57,883

15,784

12,054

C. savignyi

Animal

84,302

24,196

7,027

8,382

C. intestinalis

Animal

686,396

334,137

31,794

15,108

N. vectensis

Animal

16,619

6,206

4,609

4,294

S. purpuratus

Animal

141,833

24,770

23,256

20,773

D. melanogaster

Animal

532,557

242,235

25,241

14,965

A. aegypti

Animal

303,409

120,523

15,878

11,389

A. gambiae

Animal

216,617

95,607

13,511

9,835

A. mellifera

Animal

78085

32,860

9,581

7,800

C. elegans

Animal

346,064

219,812

28,438

21,304

S. mansoni

Animal

158,841

55,392

14,494

10,137

R. oryzae

Fungi

25,393

12,238

3,263

3,052

C. neoformans

Fungi

59,041

46,693

8,173

6,361

U. maydis

Fungi

39,308

11,236

1,289

1,109

S. pombe

Fungi

5,574

843

274

269

S. cerevisiae

Fungi

32,653

2,251

259

245

N. crassa

Fungi

28,089

7,577

1,571

1,495

M. grisea

Fungi

53,102

14,563

3,229

2,795

S. nodorum

Fungi

15,973

5,925

1,637

1,537

A. flavus

Fungi

20,371

8,495

3,004

2,772

A. nidulans

Fungi

16,848

5,499

2,240

2,090

H. capsulatum

Fungi

26,389

2,334

850

950

C. posadasii

Fungi

54,217

30,604

6,769

5,296

C. immitis

Fungi

65,754

32,162

6,484

5,133

S. sclerotiorum

Fungi

65,884

30,203

4,314

3,704

D. discoideum

Protist

155,032

46,116

4,687

4,246

P. trichocarpa

Plant

89,943

38,299

11,462

9,377

A. thaliana

Plant

1,276,692

350,380

35,856

23,412

O. sativa

Plant

977,774

374,397

43,265

25,610

P. patens

Plant

194,822

106,309

21,962

15,402

C. reinhardtii

Plant

167,641

72,903

11,353

8,514

O. lucimarinus

Plant

19,200

1,043

328

304

P. infestans

Protist

94,091

17,381

4,762

4,104

P. sojae

Protist

28,357

7,418

2,125

2,012

P. yoelii

Protist

13,925

2,863

1,019

931

P. falciparum

Protist

21,349

3,928

1,417

1,219

P. tetraurelia

Protist

86,070

44,772

11,423

10,258

T. thermophila

Protist

56,543

21,073

6,035

5,540

E. histolytica

Protist

20,404

599

174

166

P. tricornutum

Protist

89,139

14,576

3,325

2,937


*Number of raw ESTs before filtering. Number of ESTs aligned after applying our set of filters, containing at least one splice site (see Materials and methods). Number of 'transcripts' constructed from the ESTs. §Number of 'loci' (overlapping clusters of transcripts) (genes with 1+ splice site).

McGuire et al. Genome Biology 2008 9:R50   doi:10.1186/gb-2008-9-3-r50

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