Table 1

List of investigated metabolic networks and their main properties


Total number of metabolites
Number of producible metabolites (maximum scope)
Number of food molecules
Scope of input metabolites
Additional metabolites to include for maximum scope*
Reference

Escherichia coli
761
692
143
315
ATP
[25]
Heliobacter pylori
485
441
74
182
ATP
[45]
Staphylococcus aureus
644
543
83
194
ATP
[46]
Saccharomyces cerevisiae
672
667
101
342
ATP
[47]
Lactococcus lactis
508
477
92
190
ATP
[48]
Streptomyces coelicolor
601
562
104
267
ATP
[49]
Mycobacterium tuberculosis
830
642
87
235
ATP
[50]
Methanosarcina barkeri
628
566
70
161
ATP + NAD+
[51]
Geobacter sulfurreducens
541
406
41
82
ATP + NAD+ + THF + CoA
[52]
Synechocystis
879
634
18
64
ATP + NAD+ + THF + CoA + sugar

Synechocystis§
879
662
29
99
ATP + NAD+ + THF + CoA

Minimal metabolism
68
68
11
11
ATP
[16]

*For a list of equivalent molecules that give the same scope see Additional data file 1. Autotrophic growth. Heterotrophic growth. §See Additional data file 1 and Additional data file 3.

Kun et al. Genome Biology 2008 9:R51   doi:10.1186/gb-2008-9-3-r51