|
List of investigated metabolic networks and their main properties |
||||||
| Total number of metabolites |
Number of producible metabolites (maximum scope) |
Number of food molecules |
Scope of input metabolites |
Additional metabolites to include for maximum scope* |
Reference |
|
|
|
||||||
| Escherichia coli |
761 |
692 |
143 |
315 |
ATP |
[25] |
| Heliobacter pylori |
485 |
441 |
74 |
182 |
ATP |
[45] |
| Staphylococcus aureus |
644 |
543 |
83 |
194 |
ATP |
[46] |
| Saccharomyces cerevisiae |
672 |
667 |
101 |
342 |
ATP |
[47] |
| Lactococcus lactis |
508 |
477 |
92 |
190 |
ATP |
[48] |
| Streptomyces coelicolor |
601 |
562 |
104 |
267 |
ATP |
[49] |
| Mycobacterium tuberculosis |
830 |
642 |
87 |
235 |
ATP |
[50] |
| Methanosarcina barkeri |
628 |
566 |
70 |
161 |
ATP + NAD+ |
[51] |
| Geobacter sulfurreducens |
541 |
406 |
41 |
82 |
ATP + NAD+ + THF + CoA |
[52] |
| Synechocystis† |
879 |
634 |
18 |
64 |
ATP + NAD+ + THF + CoA + sugar |
‡ |
| Synechocystis§ |
879 |
662 |
29 |
99 |
ATP + NAD+ + THF + CoA |
‡ |
| Minimal metabolism |
68 |
68 |
11 |
11 |
ATP |
[16] |
|
*For a list of equivalent molecules that give the same scope see Additional data file 1. †Autotrophic growth. ‡Heterotrophic growth. §See Additional data file 1 and Additional data file 3. | ||||||
Kun et al. Genome Biology 2008 9:R51 doi:10.1186/gb-2008-9-3-r51 |
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