Genome Biology

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Open Access Method

Functionally important segments in proteins dissected using Gene Ontology and geometric clustering of peptide fragments

Karuppasamy Manikandan1,2, Debnath Pal3,1,5*, Suryanarayanarao Ramakumar3,1,2*, Nathan E Brener4, Sitharama S Iyengar4 and Guna Seetharaman4

Author Affiliations

1 Bioinformatics Centre, Indian Institute of Science, Bangalore 560012, India

2 Department of Physics, Indian Institute of Science, Bangalore 560012, India

3 Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore 560012, India

4 Department of Computer Science, Louisiana State University, Baton Rouge, LA 70803, USA

5 Main correspondence

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Genome Biology 2008, 9:R52 doi:10.1186/gb-2008-9-3-r52

Published: 10 March 2008

Additional files

Additional data file 1:

PDB files used in this work, culled from the FSSP library.

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Open Data

Additional data file 2:

Distribution of compactness values for FL8 and FL16 clusters.

Format: PDF Size: 10KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data