Functionally important segments in proteins dissected using Gene Ontology and geometric clustering of peptide fragments

Karuppasamy Manikandan¹^,2 , Debnath Pal¹^,3^,5 , Suryanarayanarao Ramakumar¹^,2^,3 , Nathan E Brener⁴ , Sitharama S Iyengar⁴ and Guna Seetharaman⁴

¹Bioinformatics Centre, Indian Institute of Science, Bangalore 560012, India

²Department of Physics, Indian Institute of Science, Bangalore 560012, India

³Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore 560012, India

⁴Department of Computer Science, Louisiana State University, Baton Rouge, LA 70803, USA

⁵Main correspondence

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Genome Biology 2008, 9:R52doi:10.1186/gb-2008-9-3-r52


Published:	10 March 2008

Subject areas: Bioinformatics, Biochemistry and structural biology

Additional files

Additional data file 1:

PDB files used in this work, culled from the FSSP library.

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Additional data file 2:

Distribution of compactness values for FL8 and FL16 clusters.

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