|
Overall statistics of generated clusters from all trans fragments |
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| FL |
Total fragments |
Total number of clusters with >2 fragments (% fragments clustered) |
Largest cluster |
|
|
|
||||
| Size (% of total fragments) |
Compactness* (SD) |
|||
|
|
||||
| 5 |
455,305 |
5,544 (98.8) |
121,220 (27) |
2.92 (1.8) |
| 6 |
446,479 |
8,466 (97.3) |
106,020 (24) |
2.62 (1.5) |
| 8 |
429,793 |
15,617 (92.1) |
79,646 (19) |
2.23 (1.2) |
| 10 |
414,207 |
22,120 (83.7) |
58,150 (14) |
2.0 (1.0) |
| 12 |
399,615 |
26,228 (72.9) |
40,935 (10) |
1.81 (0.87) |
| 14 |
385,866 |
26,778 (61.2) |
28,313 (7) |
1.68 (0.77) |
| 16 |
369,760 |
25,455 (50.8) |
19,469 (5) |
1.56 (0.70) |
| 18 |
360,537 |
23,302 (41.2) |
13,519 (4) |
1.45 (0.63) |
| 20 |
348,824 |
21,079 (33.4) |
9,551 (3) |
1.37 (0.59) |
| 22 |
337,679 |
18,646 (28.8) |
6,804 (2) |
1.29 (0.55) |
| 24 |
327,010 |
16,132 (21.4) |
4,966 (2) |
1.22 (0.52) |
|
*(Average of the distances of all fragments in a cluster from its center)/(2 × FL). SD, standard deviation. | ||||
Manikandan et al. Genome Biology 2008 9:R52 doi:10.1186/gb-2008-9-3-r52 |
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