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Systems biology-defined NF-κB regulons, interacting signal pathways and networks are implicated in the malignant phenotype of head and neck cancer cell lines differing in p53 status

Bin Yan* 1 email, Guang Chen* 2,3 email, Kunal Saigal1,4 email, Xinping Yang1 email, Shane T Jensen5 email, Carter Van Waes1 email, Christian J Stoeckert3,6 email and Zhong Chen1 email

1Head and Neck Surgery Branch, NIDCD, National Institutes of Health, Bethesda, MD 20892, USA

2Department of Bioengineering, Smith Walk; University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA

3Center for Bioinformatics, Guardian Drive; University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA

4NIH-Pfizer Clinical Research Training Program Award; University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA

5Department of Statistics, The Wharton School, Walnut Street; University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA

6Department of Genetics, School of Medicine, Curie Boulevard; University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA

author email corresponding author email* Contributed equally

Genome Biology 2008, 9:R53doi:10.1186/gb-2008-9-3-r53

Published: 11 March 2008

Subject areas: Cancer, Cell biology


Additional files

Additional data file 1:

NF-κB target genes differentially expressed in UM-SCC cell lines.

Format: PDF Size: 633KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional data file 2:

Gene Ontology annotations for NF-κB target genes in wild-type p53-deficient, mutant p53 and wild-type plus mutant p53 subsets of UM-SCC cells.

Format: PDF Size: 98KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional data file 3:

Network lists generated by IPA based on gene sets regulated by NF-κB subunits RELA/p65 and NFκB1/p50.

Format: PDF Size: 140KB Download file

This file can be viewed with: Adobe Acrobat Reader


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