Figure 2.

Mate-pair signatures for collapse style mis-assemblies. (a) Two copy tandem repeat R shown with properly sized and oriented mate-pairs. (b) Collapsed tandem repeat shown with compressed and mis-oriented mate-pairs. (c) Two copy repeat R, bounding unique sequence B, shown with properly sized and oriented mate-pairs. (d) Collapsed repeat shown with compressed and mis-linked mate-pairs.

Phillippy et al. Genome Biology 2008 9:R55   doi:10.1186/gb-2008-9-3-r55
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