Table 3

Summary of BAC sequencing

Sample
Clones with identified or sequenced breakpoints
Total number of identified/sequenced breakpoints
Intragenic rearrangements
Gene:intergenic fusions
Gene:gene fusions
Intergenic: intergenic fusions

MCF7
12
36/35
3
10
19
4
BT474
6
15/6
3
2
10
0
SKBR3
8
24/8
7
4
12
1
Breast (2B421)
3
3/3
0
0
3
0
Breast (CH514)
0
-
-
-
-
-
Ovary
4
4/4
0
0
4
0
Prostate
5
5/5
0
4
1
0
Brain
3
3/3
0
3
0
0

Breakpoints are indicated as sequenced if the nucleotide sequence was obtained, or identified if the breakpoint was localized to 3-kilobase subclones. BAC, bacterial artifical chromosome.

Raphael et al. Genome Biology 2008 9:R59   doi:10.1186/gb-2008-9-3-r59