|
Summary of BAC sequencing |
||||||
| Sample |
Clones with identified or sequenced breakpoints |
Total number of identified/sequenced breakpoints |
Intragenic rearrangements |
Gene:intergenic fusions |
Gene:gene fusions |
Intergenic: intergenic fusions |
|
|
||||||
| MCF7 |
12 |
36/35 |
3 |
10 |
19 |
4 |
| BT474 |
6 |
15/6 |
3 |
2 |
10 |
0 |
| SKBR3 |
8 |
24/8 |
7 |
4 |
12 |
1 |
| Breast (2B421) |
3 |
3/3 |
0 |
0 |
3 |
0 |
| Breast (CH514) |
0 |
- |
- |
- |
- |
- |
| Ovary |
4 |
4/4 |
0 |
0 |
4 |
0 |
| Prostate |
5 |
5/5 |
0 |
4 |
1 |
0 |
| Brain |
3 |
3/3 |
0 |
3 |
0 |
0 |
|
Breakpoints are indicated as sequenced if the nucleotide sequence was obtained, or identified if the breakpoint was localized to 3-kilobase subclones. BAC, bacterial artifical chromosome. | ||||||
Raphael et al. Genome Biology 2008 9:R59 doi:10.1186/gb-2008-9-3-r59 |
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