Table 3

Summary of BAC sequencing

Sample

Clones with identified or sequenced breakpoints

Total number of identified/sequenced breakpoints

Intragenic rearrangements

Gene:intergenic fusions

Gene:gene fusions

Intergenic: intergenic fusions

MCF7

12

36/35

3

10

19

4

BT474

6

15/6

3

2

10

0

SKBR3

8

24/8

7

4

12

1

Breast (2B421)

3

3/3

0

0

3

0

Breast (CH514)

0

-

-

-

-

-

Ovary

4

4/4

0

0

4

0

Prostate

5

5/5

0

4

1

0

Brain

3

3/3

0

3

0

0

Breakpoints are indicated as sequenced if the nucleotide sequence was obtained, or identified if the breakpoint was localized to 3-kilobase subclones. BAC, bacterial artifical chromosome.

Raphael et al. Genome Biology 2008 9:R59   doi:10.1186/gb-2008-9-3-r59