Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays

Shin Lin¹ , Benilton Carvalho² , David J Cutler¹ , Dan E Arking¹ , Aravinda Chakravarti^1,2 and Rafael A Irizarry²

¹McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, N. Broadway, Baltimore, MD 21205, USA

²Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, North Wolfe St. E3035, Baltimore, MD 21205, USA