Table 2 |
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|
Pfam families with the highest and lowest SNP A/S ratios |
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|
Pfam accession |
A/S ratio |
Number of proteins |
Pfam description |
|
|
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|
PF05296 |
0.49 |
55 |
Mammalian taste receptor protein (TAS2R) |
|
PF00001 |
0.49 |
558 |
7 transmembrane receptor (rhodopsin family) |
|
PF02798 |
0.47 |
20 |
Glutathione S-transferase, amino-terminal domain |
|
PF00043 |
0.46 |
24 |
Glutathione S-transferase, carboxy-terminal domain |
|
PF01454 |
0.45 |
24 |
MAGE family |
|
PF09723 |
0.44 |
42 |
Putative regulatory protein (CxxC_CxxC_SSSS) |
|
PF02023 |
0.44 |
39 |
SCAN domain |
|
PF00059 |
0.43 |
58 |
Lectin C-type domain |
|
PF07859 |
0.42 |
21 |
alpha/beta Hydrolase fold |
|
PF00048 |
0.40 |
23 |
Small cytokines (intecrine/chemokine), interleukin-8 like |
|
PF00105 |
0.14 |
38 |
Zinc finger, C4 type (two domains) |
|
PF00536 |
0.14 |
68 |
SAM domain (Sterile alpha motif) |
|
PF07649 |
0.13 |
45 |
C1-like domain |
|
PF00125 |
0.13 |
25 |
Core histone H2A/H2B/H3/H4 |
|
PF00535 |
0.13 |
27 |
Glycosyl transferase family 2 |
|
PF01437 |
0.13 |
31 |
Plexin repeat |
|
PF00335 |
0.13 |
23 |
Tetraspanin family |
|
PF00350 |
0.12 |
28 |
Dynamin family |
|
PF07707 |
0.11 |
36 |
BTB And C-terminal Kelch |
|
PF00433 |
0.09 |
33 |
Protein kinase C terminal domain |
|
|
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|
Top part: ten families with the highest A/S ratios. Bottom part: ten families with the lowest A/S ratios. |
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|
Liu et al. Genome Biology 2008 9:R69 doi:10.1186/gb-2008-9-4-r69 |
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