Research
Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes
1 Bioinformatics Center, Indian Institute of Chemical Biology, 4, Raja SC Mullick Road, Kolkata - 700 032, India
2 Department of Biology, The Pennsylvania State University, Mueller Lab, University Park, PA 16802, USA
3 Department of Veterinary and Biomedical Sciences, The Pennsylvania State University, University Park, PA 16802, USA
4 Structural Biology and Bioinformatics Division, Indian Institute of Chemical Biology, 4, Raja SC Mullick Road, Kolkata - 700 032, India
Genome Biology 2008, 9:R70 doi:10.1186/gb-2008-9-4-r70
Published: 9 April 2008Additional files
Additional data file 1:
Phylogenetic relationship with 16s rRNA using the neighbor joining method with Tamura-Nei model.
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Additional data file 2:
Trends in amino acid replacements in non-halophilic P. luteolum and halophilic S. ruber orthologs.
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Additional data file 3:
Trends in amino acid replacements in non-halophilic P. putida and halophilic H. marismortui chromosome I orthologs.
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Additional data file 4:
Trends in amino acid replacements in non-halophilic M. thermophila and halophilic H. marismortui chromosome I orthologs.
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Additional data file 5:
Trends in amino acid replacements in non-halophilic M. archaeon and halophilic N. pharaonis orthologs.
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Additional data file 6:
Number of amino acid replacements from non-halophilic P. luteolum to halophilic S. ruber orthologs.
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Additional data file 7:
Number of amino acid replacements from non-halophilic P. putida to halophilic H. marismortui chromosome I orthologs.
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Additional data file 8:
Number of amino acid replacements from non-halophilic M. thermophila to halophilic H. marismortui chromosome I orthologs.
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Additional data file 9:
Number of amino acid replacements from non-halophilic M. archaeon to halophilic N. pharaonis orthologs.
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Additional data file 10:
Dinucleotide relative abundance for all the organisms under study.
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Additional data file 11:
Dinucleotide frequency at the first and second codon positions for all the organisms under study.
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Additional data file 12:
RSCU of genes at the positive and negative extremes (5,000 each) of axis 3 of COA on RSCU.
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