|
General features of the 6 obligatory halophilic and 24 non-halophilic microbial genomes under study |
||||
| Organism |
Abbreviation |
Group |
ORFs under study |
GC-content (%) |
|
|
||||
| Halophiles |
||||
| Haloarcula marismortui ATCC 43049 Ch I |
HMAR1 |
Euryarchaeota |
2,705 |
62 |
| Haloarcula marismortui ATCC 43049 Ch II |
HMAR2 |
Euryarchaeota |
217 |
57 |
| Halobacterium salinarum DSM 671 |
HSAL |
Euryarchaeota |
2,191 |
68 |
| Halobacterium sp. NRC-1 |
HALO |
Euryarchaeota |
1,782 |
67 |
| Haloquadratum walsbyi DSM 16790 |
HWAL |
Euryarchaeota |
2,270 |
48 |
| Natronomonas pharaonis DSM 2160 |
NPHA |
Euryarchaeota |
2,314 |
63 |
| Salinibacter ruber DSM 13855 |
SRUB |
Bacteroidetes/Chlorobi |
2,631 |
66 |
| Non-halophiles |
||||
| Acidobacteria bacterium Ellin345 |
ABAC |
Acidobacteria |
4,507 |
58 |
| Aeropyrum pernix K1* |
APER |
Crenarchaeota |
1,519 |
56 |
| Azoarcus sp. EbN1 |
AZOA |
Betaproteobacteria |
3,673 |
65 |
| Bifidobacterium longum NCC2705 |
BLON |
Actinobacteria |
1,643 |
60 |
| Caulobacter crescentus CB15 |
CCRE |
Alphaproteobacteria |
3,453 |
67 |
| Escherichia coli K12 |
ECOL |
Gammaproteobacteria |
3,829 |
50 |
| Gloeobacter violaceus PCC 7421 |
GVIO |
Cyanobacteria |
3,947 |
62 |
| Methanosaeta thermophila PT* |
MTHP |
Euryarchaeota |
1,535 |
53 |
| Methanothermobacter thermautotrophicus str. Delta H* |
MTHA |
Euryarchaeota |
1,641 |
50 |
| Pelobacter propionicus DSM 2379 |
PPRO |
Deltaproteobacteria |
3,404 |
58 |
| Pelodictyon luteolum DSM 273 |
PLUT |
Bacteroidetes/Chlorobi |
1,926 |
57 |
| Pelotomaculum thermopropionicum SI |
PTHE |
Firmicutes |
2,544 |
53 |
| Polaromonas sp. JS666 |
POLA |
Betaproteobacteria |
5,217 |
62 |
| Pseudomonas putida KT2440 |
PPUT |
Gammaproteobacteria |
4,906 |
61 |
| Pyrobaculum calidifontis JCM 11548* |
PCAL |
Crenarchaeota |
1,932 |
57 |
| Roseiflexus castenholzii DSM 13941 |
RCAS |
Chloroflexi |
4,077 |
61 |
| Shigella boydii Sb227 |
SBOY |
Gammaproteobacteria |
3,660 |
47 |
| Synechococcus sp. WH 7803 |
SYNE |
Cyanobacteria |
2,141 |
60 |
| Thermococcus kodakarensis KOD1* |
TKOD |
Euryarchaeota |
2,006 |
52 |
| Thermofilum pendens Hrk 5* |
TPEN |
Crenarchaeota |
1,647 |
58 |
| Thermoplasma acidophilum DSM 1728* |
TACI |
Euryarchaeota |
1,371 |
46 |
| Thermotoga maritima MSB8* |
TMAR |
Thermotogae |
1,695 |
46 |
| Uncultured methanogenic archaeon RC-I |
UMET |
Euryarchaeota |
2,800 |
55 |
| Yersinia pestis Antiqua |
YPES |
Gammaproteobacteria |
3,744 |
48 |
|
*Organisms with optimum growth temperature ≥ 65°C. | ||||
Paul et al. Genome Biology 2008 9:R70 doi:10.1186/gb-2008-9-4-r70 |
||||