Table 5 |
||||
|
Secondary structure replacements of four sets of halophile proteins and their non-halophile orthologs |
||||
|
SRUB |
||||
|
|
||||
|
Alpha helix |
Beta sheet |
Coil |
||
|
PLUT |
Alpha helix |
1.000 (26212) |
0.997 (2882) |
1.355 (9976) |
|
Beta sheet |
1.003 (2891) |
1.000 (8352) |
1.26 (5019) |
|
|
Coil |
0.866 (7376) |
0.752 (3974) |
1.000 (35021) |
|
|
HMAR1 |
||||
|
|
||||
|
Alpha helix |
Beta sheet |
Coil |
||
|
PPUT |
Alpha helix |
1.000 (8699) |
1.30 (1260) |
1.59 (4447) |
|
Beta sheet |
0.77 (969) |
1.000 (2959) |
1.342 (2098) |
|
|
Coil |
0.629 (2796) |
0.745 (1563) |
1.000 (12994) |
|
|
HMAR1 |
||||
|
|
||||
|
Alpha helix |
Beta sheet |
Coil |
||
|
MTHP |
Alpha helix |
1.000 (41533) |
1.116 (6115) |
1.451 (21295) |
|
Beta sheet |
0.896 (5480) |
1.000 (12981) |
1.398 (11012) |
|
|
Coil |
0.689 (14671) |
0.715 (7877) |
1.000 (57559) |
|
|
NPHA |
||||
|
|
||||
|
Alpha helix |
Beta sheet |
Coil |
||
|
UMET |
Alpha helix |
1.000 (39245) |
0.850 (5313) |
1.328 (21724) |
|
Beta sheet |
1.176 (6247) |
1.000 (14685) |
1.303 (10098) |
|
|
Coil |
0.753 (16358) |
0.767 (7747) |
1.000 (59257) |
|
|
|
||||
|
Values represent ratios in number of forward (non-halophiles to halophiles) and backward (halophiles to non-halophiles) replacements. Entries in bold are significant at p < 10-3. Organism abbreviations are listed in Table 1. |
||||
|
Paul et al. Genome Biology 2008 9:R70 doi:10.1186/gb-2008-9-4-r70 |
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