Table 3 |
|
|
Putative deleted genes |
|
|
Gene ID |
Annotation |
|
|
|
|
DDB0167672 |
- |
|
DDB0168894 |
bioY domain |
|
DDB0184375 |
pitD: phosphatidylinositol transfer protein |
|
DDB0184376 |
B-module |
|
DDB0185937 |
Nucleotide binding protein 1-like protein |
|
DDB0186442 |
fslF: frizzled/smoothened GPCR |
|
DDB0187848 |
- |
|
DDB0188002 |
- |
|
DDB0188003 |
- |
|
DDB0188004 |
- |
|
DDB0188007 |
- |
|
DDB0188514 |
- |
|
DDB0188991 |
- |
|
DDB0191930 |
- |
|
DDB0191949 |
- |
|
DDB0202734 |
Protein kinase related (catalytically inactive) |
|
DDB0203140 |
- |
|
DDB0205403 |
- |
|
DDB0206106 |
- |
|
DDB0206108 |
- |
|
DDB0206109 |
- |
|
DDB0206110 |
- |
|
DDB0206111 |
- |
|
DDB0206112 |
- |
|
DDB0206115 |
pyr5-6 |
|
DDB0206404 |
- |
|
DDB0206525 |
- |
|
DDB0215073 |
- |
|
DDB0217158 |
- |
|
DDB0217456 |
- |
|
DDB0218143 |
Protein kinase |
|
DDB0218478 |
- |
|
DDB0219338 |
- |
|
DDB0219404 |
Dymeclin homologue - mutated in Dyggve-Melchior-Clausen syndrome |
|
DDB0219746 |
- |
|
|
|
|
Any gene with a log2 ratio below -3 in any comparison with the reference strain Ax2(Ka) is listed, along with any informative annotation available. The single gene deletion already known is pyr5-6, which was engineered in the creation of the auxotrophic strain DH1; this gene is not missing in any other strain. Strictly, some of these genes may merely have diverged in sequence in some strains sufficiently to significantly reduce hybridization to our probes (designed and amplified from the Ax4 genome). |
|
|
Bloomfield et al. Genome Biology 2008 9:R75 doi:10.1186/gb-2008-9-4-r75 |
|
