Genome Biology

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Individual mRNA expression profiles reveal the effects of specific microRNAs

Amit Arora and David AC Simpson*

Genome Biology 2008, 9:R82 doi:10.1186/gb-2008-9-5-r82

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Classification of dendritic cell phenotypes from gene expression data

Giacomo Tuana, Viola Volpato, Paola Ricciardi-Castagnoli, Francesca Zolezzi, Fabio Stella, Maria Foti BMC Immunology 2011, 12:50 (29 August 2011)

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Detecting microRNA activity from gene expression data

Stephen F Madden, Susan B Carpenter, Ian B Jeffery, Harry Björkbacka, Katherine A Fitzgerald, Luke A O'Neill, Desmond G Higgins BMC Bioinformatics 2010, 11:257 (18 May 2010)

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Reciprocal regulation of microRNA and mRNA profiles in neuronal development and synapse formation

Sergei A Manakov, Seth GN Grant, Anton J Enright BMC Genomics 2009, 10:419 (8 September 2009)

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mRNA expression profiles show differential regulatory effects of microRNAs between estrogen receptor-positive and estrogen receptor-negative breast cancer

Chao Cheng, Xuping Fu, Pedro Alves, Mark Gerstein Genome Biology 2009, 10:R90 (1 September 2009)

Most microRNAs have a stronger inhibitory effect in estrogen receptor-negative than in estrogen receptor-positive breast cancers

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Expression profiles of switch-like genes accurately classify tissue and infectious disease phenotypes in model-based classification

Michael Gormley, Aydin Tozeren BMC Bioinformatics 2008, 9:486 (17 November 2008)