Table 1

Summary of genome sequences used in this study

Strain

Sub-cluster

Clade

Location of isolation

Coordinates

Depth (m)

Genome size (Mbp)

Status

Scaffolds

Contigs

rRNA

Genes

%GC

References


Synechococcus

CC9311

5.1

I

California current, Pacific (coastal)

32°00'N, 124°30'W

95

2.61

Complete: CP000435

1

1

2

2,944

52.5

[27]

CC9605

5.1

II

California current, Pacific (oligotrophic)

-

51

2.51

Complete: CP000110

1

1

2

2,645

59.2

This work

WH8102

5.1

III

Tropical Atlantic

22°30'N, 65°36'W

2.43

Complete: BX548020

1

1

2

2,583

59.4

[26]

CC9902

5.1

IV

California current, Pacific (oligotrophic)

-

5

2;23

Complete: CP000097

1

1

2

2,358

54.2

This work

BL107

5.1

IV

Blanes Bay, Mediterranean Sea

41°43'N, 3°33'E

1,800

2.28

WGS: AATZ00000000

1

6

2

2,553

54.2

This work

WH7803

5.1

V

Sargasso Sea

33°45'N, 67°30'W

25

2,37

Complete: CT971583

1

1

2

2,586

60.2

This work

WH7805

5.1

VI

Sargasso Sea

33°45'N, 67°30'W

2.62

WGS: AAOK00000000

1

13

2

2,934

57.5

This work

RS9917

5.1

VIII

Gulf of Aqaba, Red Sea

29°28'N, 34°55'E

10

2.58

WGS: AANP00000000

1

9

2

2,820

64.8

This work

RS9916

5.1

IX

Gulf of Aqaba, Red Sea

29°28'N, 34°55'E

10

2.66

WGS: AAUA00000000

1

4

2

3,009

59.8

This work

WH5701

5.2

-

Long Island Sound

-

-

2.86*

WGS: AANO00000000

2

9

2

3,129

66.0

This work

RCC307

5.3

-

Mediterranean Sea

39°10'N, 6°17'E

15

2.22

Complete: CT978603

1

1

1

2,583

60.8

This work

Prochlorococcus

MIT9313

LL

Northern Atlantic

37°05'N, 68°02'W

135

2.41

Complete: BX548175

1

1

2

2,330

50.7

[22]

SS120

LL

Sargasso Sea

28°59'N, 64°21'W

120

1.75

Complete: AE017126

1

1

1

1,930

36.4

[48]

MED4

HLI

Mediterranean Sea

43°12'N, 06°52'E

5

1.66

Complete: BX548174

1

1

1

1,763

30.8

[22]


*The WGS release includes 135 contigs; many of these are very small and are likely to be from a co-cultured contaminant. This work; formerly subcluster 5.1, clade X [12].

Dufresne et al. Genome Biology 2008 9:R90   doi:10.1186/gb-2008-9-5-r90

Open Data